SRV                     Statistical Recoupling of Variables
SRV.plot                Plot SRV clusters
SRV_lod.plot            Plot top lod SRV clusters
Top_SRV.plot            Plot top SRV clusters
alignSp                 Base function for Spectrum Alignment
align_mQTL              Peak alignment and normalisation of metabolomic
                        data
attachSegments          Concatenation of test and reference segments
circle_mQTL             Circular genome-metabolome plot for mQTL.NMR
configureRSPA           segmentaion and recursive alignment parameters
format_mGWA             Routine to reformat the data into the required
                        format to perform mGWAS
format_mQTL             Routine to reformat the data of animal crosses
                        into the required format to perform mQTL
                        mapping
load_datafiles          Load data files for examples
load_demo_data          Load demo data files
mQTL.NMR-package        Metabolomic Quantitative Trait Locus mapping
                        for 1H NMR data
matchSegments           Matching the segment of interest to the
                        corresponding reference
normalise               Base function of normalisation
normalise_mQTL          Normalisation of metabolomic data
peakPeaks               Peak picking algorithm
post_mQTL               Plot top LOD results
ppersp                  Plot a 3-D profile of LODs
pplot                   Plot a color scale layer
pre_mQTL                Statistical Recoupling of variables for mQTL
                        analysis
process_mGWA            Metabolomic Genome-Wide Association analysis
                        for a set of independent individuals
process_mQTL            mQTL mapping
segmentateSp            Segmentation of a spectrum of interest
selectRefSp             Automated selection of a reference spectrum
setupRSPA               setup of alignment parameters
sgolay                  Find the matrix of differentiation filters
sgolayDeriv             Calculate smoothed derivates
simple.plot             Plot NMR profile plus SRV regions
summary_mQTL            Function to summarize the mQTL mapping results
                        of all the runs and their differences
