Package: customProDB
Type: Package
Title: Generate customized protein database from NGS data, with a focus
        on RNA-Seq data, for proteomics search.
Version: 1.14.1
Date: 2017-02-08
Author: xiaojing wang
Maintainer: xiaojing wang <xiaojing.wang@bcm.edu>
Description: Generate customized protein sequence database from RNA-Seq
        data for proteomics search
License: Artistic-2.0
Depends: R (>= 3.0.1), IRanges, AnnotationDbi, biomaRt
Imports: S4Vectors (>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges,
        Rsamtools (>= 1.10.2), GenomicAlignments, Biostrings (>=
        2.26.3), GenomicFeatures (>= 1.17.13), biomaRt (>= 2.17.1),
        stringr, RCurl, plyr, VariantAnnotation (>= 1.13.44),
        rtracklayer, RSQLite, AnnotationDbi
Suggests: BSgenome.Hsapiens.UCSC.hg19
LazyLoad: yes
biocViews: MassSpectrometry, Proteomics, SNP, RNASeq, Software,
        Transcription, AlternativeSplicing
NeedsCompilation: no
Packaged: 2017-02-11 00:32:27 UTC; biocbuild
Built: R 3.3.2; ; 2017-02-11 02:51:32 UTC; windows
