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| bioCancer-package | Launch bioCancer with default browser |
| attriColorGene | Attribute Color to Gene |
| attriColorValue | Attribute Color to Value |
| attriColorVector | Attribute color to a vector of numeric values |
| attriShape2Gene | Attribute shape to nodes |
| attriShape2Node | Attributes shape to Nodes |
| bioCancer | Launch bioCancer with default browser |
| checkDimensions | Chech wich Cases and genetic profiles are available for every seleted study |
| coffeewheel | This is an htmlwidgets-based visualization tool for hierarchical data. It is zoomable, meaning that you can interact with the hierarchy and zoom in/out accordingly. |
| coffeewheelOutput | Widget output function for use in Shiny |
| displayTable | Display dataframe in table using DT package |
| Edges_Diseases_obj | get Edges dataframe for Gene/Disease association from geNetClassifier |
| getFreqMutData | get mutation frequency |
| getListProfData | get list of data frame with profiles data (CNA,mRNA, Methylation, Mutation...) |
| grepRef | search and get genetic profiles (CNA,mRNA, Methylation, Mutation...) |
| metabologram | Circular plot of hierarchital data of genetic profile. |
| Mutation_obj | Atribute mutation frequency to nodes |
| Node_df_FreqIn | Attributes size to Nodes depending on number of interaction |
| Node_Diseases_obj | Attributes color and shape to Nodes of Diseases |
| Node_obj_CNA_ProfData | Attribute CNA data to node border |
| Node_obj_FreqIn | Attribute interaction frequency to node size |
| Node_obj_Met_ProfData | Attribute gene Methylation to Nodes |
| Node_obj_mRNA_Classifier | Atrribute genes expression to color nodes |
| renderCoffeewheel | Widget render function for use in Shiny |
| reStrColorGene | Restructure the list of color attributed to the genes in every dimenssion for every studies |
| reStrDimension | Restructure the list of color attributed to the genes in every study for every dimensions |
| reStrDisease | Restructure the list of color attributed to the genes in every disease |
| sampleWheelData | Sample data for wheel initialization |
| Studies_obj | get object for grViz. Link Studies to genes |
| UnifyRowNames | Unify row names in data frame with the same order of gene list. |
| whichGeneList | Verify which gene list is selected |