d78e5d4bfb7b395cc500293e255d3365 *CITATION
fb7785c4cbacabf57573c8566ab85e63 *DESCRIPTION
3c517241f126089cef17abbf71ca3a6e *INDEX
f6c72b0169220fe76a82c0bc74cc2a4e *Meta/Rd.rds
41796f94fa84d3151f9887b714bff42e *Meta/hsearch.rds
cc5b4c2bcfc02ba0aa0952f7d3038ecb *Meta/links.rds
587e9083df3c4039c518e447aeca3ab8 *Meta/nsInfo.rds
c1df428317408b364bca58f19e881a2d *Meta/package.rds
db6b3272d0bf2536df3d4c80cdf858ba *Meta/vignette.rds
e1e45984e75c9bf72e94f4c1c78c5dbd *NAMESPACE
843ddb378781df6136c067d6d0ee13e4 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/VariantAnnotation
9bd07c184e348e6adc30fab6144e6b3a *R/VariantAnnotation.rdb
d1464e2abf881918aeb75e2b99664157 *R/VariantAnnotation.rdx
516b3343dc68d663fac6a41d21e7c915 *doc/VariantAnnotation.R
2edfd71030a058f71666da1a0cebdc82 *doc/VariantAnnotation.Rnw
d41b67a3dc56a6d32e1d627a37a2a494 *doc/VariantAnnotation.pdf
f900f6b0aef3b2cd12d04d41c3b1b206 *doc/filterVcf.R
f55a2d3b62efed29364d7b0f3c24479e *doc/filterVcf.Rnw
ddf355f0e9c8c71a4c66c89d2985e171 *doc/filterVcf.pdf
a0baf6192beeca68e82ca9bf76e68d7a *doc/index.html
be4950fb484e1070402e189e254b1a92 *extdata/chr22.vcf.gz
c303d8a0cc7e6314b5f42348221b0d3b *extdata/chr22.vcf.gz.tbi
a4ca21413e322997ed17c5429e65b9ca *extdata/chr7-sub.vcf.gz
dc5c0ecc784ff39509a164f3020b72f8 *extdata/chr7-sub.vcf.gz.tbi
b325a60a320b6aebb41d41d1dafb9c6d *extdata/ex2.vcf
277341ce20f406ab09a0c23c6bd0d86f *extdata/gl_chr1.vcf
f2a805083bd71e155f977ffb49df2cd5 *extdata/h1187-10k.vcf.gz
fab30e49f0d054d462f8e1737844b204 *extdata/h1187-10k.vcf.gz.tbi
dac0f427ab59994c11859f2b09bab618 *extdata/hapmap_exome_chr22.vcf.gz
ff0775ab73d21645fa114d487e5ebcfd *extdata/hapmap_exome_chr22.vcf.gz.tbi
48852d332eb21dd639b4c6be53762357 *extdata/structural.vcf
0b44d6d5bbcd3c93ef43296ff45062a1 *help/AnIndex
d2829700fd54e3f3de0f402382f30a04 *help/VariantAnnotation.rdb
63528e16d8d3eed4d4eb7ff344b017f8 *help/VariantAnnotation.rdx
101ad1d4556a299a2514c1bea17937fc *help/aliases.rds
defba1a973145f907c9531cd76e1bc5a *help/paths.rds
72cf8d826461065af34e6dc836e811ab *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
590f125ecdf8806919655904a1d3e6ed *libs/i386/VariantAnnotation.dll
260fc3027b73d81d77b905661d65b88f *libs/x64/VariantAnnotation.dll
17f1c6f05e7a9ff7756b6efabce3f745 *scripts/test_Rplinkseq.R
b7a9592a5de31dd84a3f7e8d1e0332de *unitTests/cases/FORMAT_header_no_SAMPLEs.vcf
6e6064d7c429a35bc80235a253eed6f3 *unitTests/cases/VarScan_header.vcf
0c5f14796bf4eb3683ceff8e559f43d7 *unitTests/cases/banded_gvcf.vcf
1e72c29c93e39910d59e569aad8db3db *unitTests/cases/expand.vcf
b94fb85e5ef300d87ab437d75f899b5a *unitTests/cases/fewer-FORMAT-than-GENO.vcf
3e81314c823a90ca24120330c546e7b0 *unitTests/cases/missing-FORMAT-metadata-elt.vcf
ba4c3b28d5f63740fda11e70a19eccd7 *unitTests/cases/mixedStructural.vcf
0230db3391a4a664fd5e2236fd0e5a92 *unitTests/cases/multiple_INFO_fields.vcf
752d9d47c17d8f66791ce8804d88dbf6 *unitTests/cases/negative_FORMAT_Number.vcf
39d8ae8aa155e4bac07e9215017143e7 *unitTests/cases/no_FORMAT_column.vcf
4be0f539f13136116e1df4292adeb571 *unitTests/cases/no_GENO_row.vcf
a99d3b281abdd928c30fd147de3848a0 *unitTests/cases/no_INFO_header.vcf
0c5bd63cfafbad13a8591b4963e0d411 *unitTests/cases/unspecified_INFO_FORMAT_fields.vcf
0b5b4448b336d5a5b56d18cf818f9712 *unitTests/test_SIFTandPolyPhen.R
00158d8fd4f8a5d3b57b6ffd6568a17e *unitTests/test_ScanVcfParam-class.R
deec5b8987b38c611ce716607cf36867 *unitTests/test_VCF-class.R
e07cf8ff3ef774a4702083cd51bb946c *unitTests/test_VRanges-class.R
ff0b44d8aee8150a56bff44075467583 *unitTests/test_expand-methods.R
9561c767f5acb5fc74cd359c678612cf *unitTests/test_filterVcf.R
7c00151d0528b740a94ddb9a8504898a *unitTests/test_genotypeToSnpMatrix.R
2c2205ed5a0c6d352887365ce90f025a *unitTests/test_isSNV.R
3fb1e09a0eb712fc6dac04bac8c2bf3a *unitTests/test_locateVariants-methods.R
b92e0e7b951b75b850b37d0204efa1f5 *unitTests/test_predictCoding-methods.R
f674942fdd74339349c66154a0a324e2 *unitTests/test_readVcf-methods.R
8afab6fc17e9f3105b9b13665c8d10de *unitTests/test_scanVcf.R
e45debe5cc9e5a797032c5ece476a74c *unitTests/test_snpSummary.R
d98bfd1bf44ccafabe740b9ae42d1208 *unitTests/test_summarizeVariants-methods.R
63c02835c8ecc7f75d976dff37e41444 *unitTests/test_writeVcf-methods.R
