SushiColors             Generates a Sushi color palette
Sushi_5C.bedpe          Sushi_5C.bedpe
Sushi_ChIAPET_pol2.bedpe
                        Sushi_ChIAPET_pol2.bedpe
Sushi_ChIPExo_CTCF.bedgraph
                        Sushi_ChIPExo_CTCF.bedgraph
Sushi_ChIPSeq_CTCF.bedgraph
                        Sushi_ChIPSeq_CTCF.bedgraph
Sushi_ChIPSeq_pol2.bed
                        Sushi_ChIPSeq_pol2.bed
Sushi_ChIPSeq_pol2.bedgraph
                        Sushi_ChIPSeq_pol2.bedgraph
Sushi_ChIPSeq_severalfactors.bed
                        Sushi_ChIPSeq_severalfactors.bed
Sushi_DNaseI.bedgraph   Sushi_DNaseI.bedgraph
Sushi_GWAS.bed          Sushi_GWAS.bed
Sushi_HiC.matrix        Sushi_HiC.matrix
Sushi_RNASeq_K562.bedgraph
                        Sushi_RNASeq_K562.bedgraph
Sushi_genes.bed         Sushi_genes.bed
Sushi_hg18_genome       Sushi_hg18_genome
Sushi_transcripts.bed   Sushi_transcripts.bed
addlegend               adds a legend to a Sushi plot
chromOffsets            defines chromosome offsets for plotting multi
                        chromosomal plot (eg plotManhattan)
convertstrandinfo       Converts strand info to 1 / -1
labelgenome             Adds genome coordinates to the x-axis of a
                        Sushi plot
labelplot               adds a letter and a title to a plot
maptocolors             maps numeric vector to color palette
maptolwd                maps numeric vector to line widths
opaque                  makes colors transparent (or opaque)
plotBed                 plots data stored in bed file format
plotBedgraph            plots data stored in bed file format
plotBedpe               plots data stored in bed file format
plotGenes               plots gene structure or transcript structures
plotHic                 plots HiC interactio matrix
plotManhattan           plots a Manhattan plot
sortChrom               sort chromosome files by chom name
zoombox                 Adds a zoom box to a plot
zoomsregion             Adds a zoom region to a plot
