Package: SRGnet
Title: SRGnet An R package for studying synergistic response genes from
        transcriptomics data
Version: 1.0.0
Authors@R: c(person("Isar", "Nassiri", email = "isar_nassiri@urmc.rochester.edu", role = c("aut", "cre")))
Description: We developed SRMnet to analyze synergistic regulatory mechanisms in transcriptome profiles that act to enhance the overall cell response to combination of mutations, drugs or environmental exposure. This package can be used to identify regulatory modules downstream of synergistic response genes, prioritize synergistic regulatory genes that may be potential intervention targets, and contextualize gene perturbation experiments.
Depends: R (>= 3.2.2), EBcoexpress, MASS, igraph, pvclust (>= 2.0-0),
        RedeR, gRain (>= 1.2-5), gbm (>= 2.1.1), limma, DMwR (>=
        0.4.1), matrixStats
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1.9000
biocViews: Software, StatisticalMethod, Regression
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-10-18 00:35:01 UTC; biocbuild
Author: Isar Nassiri [aut, cre], Matthew McCall [aut, cre]
Maintainer: Isar Nassiri <isar_nassiri@urmc.rochester.edu>
Built: R 3.3.1; ; 2016-10-18 04:56:47 UTC; windows
