# GC-SIM-MS data processing and alaysis tool

## Documentation for package ‘SIMAT’ version 1.6.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

SIMAT-package | This package is for processing GC-SIM-MS data
getEIC | Get the EIC of a peak
getPeak | Get all peaks corresponding to targets in several runs
getPeakScore | Calculate the similarity score for all peaks
getRI | Generate a calibration function
getRIStandard | Get the RI standard information
getScore | Calculate similarity score for a peak
getTarget | Get target information
getTargetTable | Get target table information
Library | Extracted compound information from an MSL library.
optFrag | Fragment selection through optimization
plotEIC | Plotting EIC of one peak
plotTIC | Plotting TIC of one run
putTargetTable | Put target table information
readCDF | Read raw mass spectrometry data in netCDF files
readMSL | Read mass spectral library (MSL) files
RItable | Extracted RI standard information from a 'csv' file.
Run | Extracted peaks from one SIM run.
SIMAT | This package is for processing GC-SIM-MS data
target.table | Extracted target information from a 'csv' file.
Targets | Targets information in a list.
writeMSL | Write targets information into a file with mass spectral library (MSL) format.