# Generated by roxygen2: do not edit by hand

export(coreOTUModule)
export(coreOTUModuleUI)
export(createPathoStat)
export(findRAfromCount)
export(findTaxonLevel)
export(findTaxonMat)
export(findTaxonomy)
export(getShinyInput)
export(getShinyInputCombat)
export(getShinyInputOrig)
export(grepTid)
export(loadPathoscopeReports)
export(loadPstat)
export(log2CPM)
export(pathostat)
export(plotConfRegion)
export(readPathoscopeData)
export(runPathoStat)
export(savePstat)
export(setShinyInput)
export(setShinyInputCombat)
export(setShinyInputOrig)
exportClasses(PathoStat)
import(BiocStyle)
import(MCMCpack)
import(alluvial)
import(corpcor)
import(ggplot2)
import(grDevices)
import(graphics)
import(knitr)
import(limma)
import(matrixStats)
import(methods)
import(pander)
import(phyloseq)
import(rentrez)
import(reshape2)
import(stats)
importFrom(BatchQC,batchqc_pca)
importFrom(DT,dataTableOutput)
importFrom(XML,xmlToList)
importFrom(ape,rtree)
importFrom(dplyr,add_rownames)
importFrom(dplyr,mutate_)
importFrom(dplyr,mutate_each)
importFrom(dplyr,select_)
importFrom(gtools,logit)
importFrom(phyloseq,nsamples)
importFrom(phyloseq,otu_table)
importFrom(plyr,ddply)
importFrom(plyr,numcolwise)
importFrom(rmarkdown,render)
importFrom(scales,percent_format)
importFrom(shiny,NS)
importFrom(shiny,column)
importFrom(shiny,fluidRow)
importFrom(shiny,h4)
importFrom(shiny,mainPanel)
importFrom(shiny,plotOutput)
importFrom(shiny,reactive)
importFrom(shiny,renderPlot)
importFrom(shiny,renderText)
importFrom(shiny,renderUI)
importFrom(shiny,runApp)
importFrom(shiny,selectizeInput)
importFrom(shiny,sidebarLayout)
importFrom(shiny,sidebarPanel)
importFrom(shiny,sliderInput)
importFrom(shiny,tabPanel)
importFrom(shiny,tabsetPanel)
importFrom(shiny,textOutput)
importFrom(shiny,uiOutput)
importFrom(tidyr,"%>%")
importFrom(tidyr,gather_)
importFrom(utils,browseURL)
importFrom(utils,read.table)
