# DiffLogo: A comparative visualisation of sequence motifs

## Documentation for package ‘DiffLogo’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

Alphabet | built alphabet
ASN | ASN alphabet
createDiffLogoObject | DiffLogo object
differenceOfICs | normalized information content differences
diffLogo | Draw DiffLogo
diffLogoFromPwm | Draw DiffLogo from PWM
diffLogoTable | Draw DiffLogo-table
DNA | DNA alphabet
getPwmFromAlignment | Create PWM from alignment
informationContent | information content
lossOfAbsICDifferences | the change of information content
normalizedDifferenceOfProbabilities | normalized probability differences
probabilities | probabilities
RNA | RNA alphabet
seqLogo | Draw sequence logo
shannonDivergence | shannon divergence
sumOfAbsICDifferences | sum of absolute information content differences
sumOfAbsProbabilityDifferences | sum of absolute probability differences
sumProbabilities | sum of probabilities, i.e. 1.0