DMRcaller               Call Differentially Methylated Regions (DMRs)
                        between two samples
DMRsNoiseFilterCG       The DMRs between WT and met1-3 in CG context
GEs                     The genetic elements data
analyseReadsInsideRegionsForCondition
                        Analyse reads inside regions for condition
computeDMRs             Compute DMRs
computeMethylationDataCoverage
                        Compute methylation data coverage
computeMethylationProfile
                        Compute methylation profile
computeOverlapProfile   Compute Overlaps Profile
filterDMRs              Filter DMRs
getWholeChromosomes     Get whole chromosomes from methylation data
mergeDMRsIteratively    Merge DMRs iteratively
methylationDataList     The methylation data list
plotLocalMethylationProfile
                        Plot local methylation profile
plotMethylationDataCoverage
                        Plot methylation data coverage
plotMethylationProfile
                        Plot Methylation Profile
plotMethylationProfileFromData
                        Plot methylation profile from data
plotOverlapProfile      Plot overlap profile
poolMethylationDatasets
                        Pool methylation data
poolTwoMethylationDatasets
                        Pool two methylation datasets
readBismark             Read Bismark
readBismarkPool         Read Bismark pool
saveBismark             Save Bismark
