DECIPHER-package	DECIPHER-package
Add2DB	Add2DB
AdjustAlignment	AdjustAlignment
AlignDB	AlignDB
AlignProfiles	AlignProfiles
AlignSeqs	AlignSeqs
AlignSynteny	AlignSynteny
AlignTranslation	AlignTranslation
AmplifyDNA	AmplifyDNA
Array2Matrix	Array2Matrix
BrowseDB	BrowseDB
BrowseSeqs	BrowseSeqs
CalculateEfficiencyArray	CalculateEfficiencyArray
CalculateEfficiencyFISH	CalculateEfficiencyFISH
CalculateEfficiencyPCR	CalculateEfficiencyPCR
Codec	Codec
ConsensusSequence	ConsensusSequence
CorrectFrameshifts	CorrectFrameshifts
CreateChimeras	CreateChimeras
DB2Seqs	DB2Seqs
DECIPHER	DECIPHER-package
deltaGrules	deltaGrules
deltaHrules	deltaHrules
deltaSrules	deltaSrules
DesignArray	DesignArray
DesignPrimers	DesignPrimers
DesignProbes	DesignProbes
DesignSignatures	DesignSignatures
DigestDNA	DigestDNA
Disambiguate	Disambiguate
DistanceMatrix	DistanceMatrix
FindChimeras	FindChimeras
FindSynteny	FindSynteny
FormGroups	FormGroups
HEC_MI1	HEC_MI
HEC_MI2	HEC_MI
IdClusters	IdClusters
IdConsensus	IdConsensus
IdentifyByRank	IdentifyByRank
IdLengths	IdLengths
MaskAlignment	MaskAlignment
MeltDNA	MeltDNA
MIQS	MIQS
MODELS	MODELS
NNLS	NNLS
OrientNucleotides	OrientNucleotides
pairs.Synteny	Synteny-class
plot.Synteny	Synteny-class
PredictDBN	PredictDBN
PredictHEC	PredictHEC
print.Synteny	Synteny-class
ReadDendrogram	ReadDendrogram
RESTRICTION_ENZYMES	RESTRICTION_ENZYMES
SearchDB	SearchDB
Seqs2DB	Seqs2DB
StaggerAlignment	StaggerAlignment
Synteny-class	Synteny-class
TerminalChar	TerminalChar
TileSeqs	TileSeqs
TrimDNA	TrimDNA
WriteDendrogram	WriteDendrogram
[.Synteny	Synteny-class
