Package: CountClust
Type: Package
Title: Clustering and Visualizing RNA-Seq Expression Data using Grade
        of Membership Models
Version: 1.2.0
Date: 2016-03-13
Authors@R: c( person("Kushal", "Dey", email = "kkdey@uchicago.edu",
        role = c("aut","cre")), person("Joyce", "Hsiao", email =
        "joyce.hsiao1@gmail.com", role = "aut"), person("Matthew",
        "Stephens", email = "stephens999@gmail.com", role ="aut"))
Maintainer: Kushal Dey <kkdey@uchicago.edu>
Description: Fits grade of membership models (GoM, also known as
        admixture models) to cluster RNA-seq gene expression count
        data, identifies characteristic genes driving cluster
        memberships, and provides a visual summary of the cluster
        memberships.
Depends: R (>= 3.3.0), ggplot2 (>= 2.1.0)
URL: https://github.com/kkdey/CountClust
License: GPL (>= 2)
LazyData: true
Encoding: UTF-8
Imports: maptpx, slam, plyr(>= 1.7.1), cowplot, gtools, flexmix,
        picante, limma, parallel, reshape2, stats, utils, graphics,
        grDevices
Suggests: knitr, BiocStyle, Biobase, roxygen2, RColorBrewer, devtools,
        xtable
VignetteBuilder: knitr
biocViews: RNASeq, GeneExpression, Clustering, Sequencing,
        StatisticalMethod, Software, Visualization
RoxygenNote: 5.0.1
NeedsCompilation: no
Author: Kushal Dey [aut, cre], Joyce Hsiao [aut], Matthew Stephens
        [aut]
Packaged: 2016-10-18 00:32:45 UTC; biocbuild
Built: R 3.3.1; ; 2016-10-18 01:50:56 UTC; windows
