GS_UV                   UV signature gene significance (GS)
GS_Vem                  Vemurafenib resistance gene significance (GS)
GS_lscore               Lymphocyte score gene significance (GS)
GS_pmet                 Primary vs metastasis gene significance (GS)
GS_survival             Survival gene significance (GS)
METree_GO               Gene tree of co-expression network
MM                      Module membership
MS_UV_bar               UV signature module significance scaled for
                        barplot
MS_Vem_bar              Vemurafenib resistance module significance
                        scaled for barplot
MS_lscore_bar           Lymphocyte score module significance scaled for
                        barplot
MS_pmet_bar             Primary vs metastasis module significance
                        scaled for barplot
MS_survival_bar         Survival module significance scaled for barplot
WGCNAmelanoma_extension
                        Melanoma co-expression network CVE extension
genes_WGCNA             Top 5000 most variant genes in TCGA RNAseq data
label_order             Label order of co-expression modules
modules                 Module assignment of top 5000 most variant
                        genes in TCGA RNAseq data
oncotator_example       Example Oncotator output for the case study
                        described in the paper
openCVE                 Open Cancer Variant Explorer (CVE) Shiny app
