89e65c45a30f24a1b2c9aa20fb2a744b *DESCRIPTION
3aab6c6d4e5ecbf5680c668f43c2f115 *INDEX
082631e912fb1163880bff0ee1b63e1a *Meta/Rd.rds
c9d74edc67d3b2f81f20df516f181a62 *Meta/data.rds
1599521e299a622100f7796c8907b96b *Meta/hsearch.rds
55802f1f6f69dfcf00316ddab923c6d5 *Meta/links.rds
55c17e26457d488f3c089613f6b2d8aa *Meta/nsInfo.rds
891f25df56b8952243b1635d1dd92776 *Meta/package.rds
01a86e72b40e2ab245b89f99475b63b7 *Meta/vignette.rds
6927c82ca22e5943d6bf22d6abcf4b9c *NAMESPACE
3a5fbb3686117c9533c9649b898fb26c *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Biostrings
1c46b8fa1bc3c069d31f4356a858427b *R/Biostrings.rdb
550b0b5977317d32b5605efa5358a547 *R/Biostrings.rdx
fb21544885b0d8e223dc707a19f703a6 *data/BLOSUM100.rda
370ae409745a34652b50f6c0992a7c36 *data/BLOSUM45.rda
ff21fdf7ae6c26d41265485e06678c47 *data/BLOSUM50.rda
938f1640bbcee65ce83726127c8efa8f *data/BLOSUM62.rda
ec70a69370ee7b924a1521bd22a0b92a *data/BLOSUM80.rda
4bb649b15a1c70fdc6beb4ea37ca8d58 *data/HNF4alpha.rda
b85025df056de88ad4e0ec260b4fbd3e *data/PAM120.rda
d790bbcef52f77bdbac03ca4fe317a0d *data/PAM250.rda
5ab6a6fb04f2bb2011c96abdea970b87 *data/PAM30.rda
d234baa0914f6233478aa0687fdbe10c *data/PAM40.rda
8533b9535b841e231b9babd78d584885 *data/PAM70.rda
d1f902614de1a9eba90d8387690c2688 *data/phiX174Phage.rda
ea5bd4d16695006aab9061c351649bb6 *data/srPhiX174.rda
e566417a897993c19e4b81e517778b6c *data/yeastSEQCHR1.rda
3efc1f8f1ed38992daa06eebf7089093 *doc/Biostrings2Classes.R
d7f69eedb9db937ef0b727cd1d558b8d *doc/Biostrings2Classes.Rnw
55bcc4886bc01070c81b5345be86414f *doc/Biostrings2Classes.pdf
22d58e22ff1471f38f0c65b9c729d7c5 *doc/BiostringsQuickOverview.Rnw
233a093bc07ca04005a8cd854fd17f53 *doc/BiostringsQuickOverview.pdf
ace2aaa19a8c155063245051e600608b *doc/MultipleAlignments.R
61f53dbee2860c3e5cd6924d8e158129 *doc/MultipleAlignments.Rnw
c403e2f257c1e5d6d403f3f1cadc89a3 *doc/MultipleAlignments.pdf
d5ead973798874d96822c55b86b48d89 *doc/PairwiseAlignments.R
8bedd825a4ccb05be73053f55ee63acc *doc/PairwiseAlignments.Rnw
62e727bc222af36ada27d09dfa4b16a6 *doc/PairwiseAlignments.pdf
c464dac6b998f0d563b32be23d69e3e4 *doc/index.html
2a20cd27e459126e737ef5d753ebddbe *doc/matchprobes.R
b239f15493ac1bc5ab95d1afd25a2b28 *doc/matchprobes.Rnw
94fbe682829124f58cc27e4fb75a683a *doc/matchprobes.pdf
78e8db3ebcbc095287e6fd8ccfe0e1a2 *extdata/Phylip.txt
fce14be25eab8521b6ee474b4c36a7df *extdata/README
24604bc9ec4790d5d590a623edea5548 *extdata/Sc.fa
1a6fe1b8caec191eb16265cc5b1d7563 *extdata/Sp.fa
11861abec072717c887a753e28f05f56 *extdata/dm3_upstream2000.fa.gz
cfea9d61b851d60768c0751e17ab9937 *extdata/fastaEx.fa
c4114941da5b3499beff7b3f87c84166 *extdata/hg18chr8_gap.txt
76897b4820e1ed23b787a171ae4d3b5a *extdata/hg18chrY_gap.txt
3f5e79e34a204b72bb52b2e5d2b79f19 *extdata/msx2_mRNA.aln
23770dfd9eb85ab715b4cc28268bbc42 *extdata/s_1_sequence.txt
6210f3d073b676bc7bed60172a72c3e3 *extdata/someORF.fa
2fc0b8e9625d6ebebf8fca9cb7737ebd *extdata/someORF.fa.gz
d521f36aedc9ecfc80f684dcfd547da4 *help/AnIndex
980af1a2afba72d98ea652f52dd3309f *help/Biostrings.rdb
f2d6211c1b9f7212950afbff5b258674 *help/Biostrings.rdx
9c3bd09a67e08f2c1f9ad10d19263080 *help/aliases.rds
07e5d6af5510b7d1a000799a56697b1a *help/paths.rds
c0354550c09225825c491bd3c7d05fce *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
608047e5166d641a8ecb4f4f02d2294b *include/Biostrings_defines.h
fec43c1846f3bba85aa803354f52ef74 *include/Biostrings_interface.h
e27db4c0e66fa6c49509cadf03b3616e *include/_Biostrings_stubs.c
c7b0f6536f8c3ff3a9f110f4c4ae3cac *libs/i386/Biostrings.dll
9310c84e345fead404d58c6c636fa1d4 *libs/x64/Biostrings.dll
16f044e2cdb85f2d44f501610554df57 *unitTests/test_MultipleAlignment.R
1437c2c15ae9d298a46c40bdc46455f9 *unitTests/test_XString.R
a96552f0e445683eda61fc9ec1ecead4 *unitTests/test_XStringSet.R
46c6cf375691dccb047582d39ca71bef *unitTests/test_XStringSetList.R
c6fed7d62d87e8fd0fd23f978a072ba9 *unitTests/test_findPalindromes.R
5a4fe6582d86f20f68c627d1efd511c0 *unitTests/test_matchDNAPattern.R.FIXME
0371bd65424b6b0160dd18f537333cc0 *unitTests/test_matchPDict.R
81024370010e243c14bd882b4cb9a727 *unitTests/test_pairwiseAlignment.R
407a2929d7f9fce74bd30e731a492477 *unitTests/test_twoWayAlphabetFrequency.R
