Annotation and gene expression data retrieval from Bgee database

Documentation for package ‘BgeeDB’ version 2.0.0

Bgee	Bgee Reference Class
Bgee-class	Bgee Reference Class
formatData	Format RNA-seq or Affymetrix data downloaded from Bgee.
getAnnotation	Retrieve Bgee experiments annotation for targeted species and data type.
getData	Retrieve Bgee RNA-seq or Affymetrix data.
listBgeeRelease	List Bgee releases available to use with BgeeDB package
listBgeeSpecies	List species in the Bgee database and the available data types for each of them
loadTopAnatData	Retrieve data from Bgee to perform GO-like enrichment of anatomical terms, mapped to genes by expression patterns.
makeTable	Formats results of the enrichment test on anatomical structures.
topAnat	Produces an object allowing to perform GO-like enrichment of anatomical terms using the topGO package