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| analysis | Return type of analysis |
| analysis-method | Return type of analysis |
| AnaquinData | Create Anaquin dataset |
| input | Return input concentration |
| input-method | Return input concentration |
| label | Return classified labels |
| label-method | Return classified labels |
| measured | Return measured abundance |
| measured-method | Return measured abundance |
| mixtureA | RnaQuin mixture A |
| mixtureB | RnaQuin mixture B |
| mixtureF | RnaQuin mixture F |
| plotLinear | Plot linear model for sequins |
| plotLODR | Create Limit-of-Detection Ratio (LODR) plot |
| plotLogistic | Plot logistic model for sequins |
| plotROC | Create ROC plot |
| pval | Return p-value probability |
| pval-method | Return p-value probability |
| qval | Return q-value probability |
| qval-method | Return q-value probability |
| ratio | Return ratio |
| ratio-method | Return ratio |
| RnaQuin.gen2iso | Convert sequin isoforms to genes |
| RnaQuin.gen2iso-method | Convert sequin isoforms to genes |
| RnaQuin.genes | Return RnaQuin genes |
| RnaQuin.genes-method | Return RnaQuin genes |
| RnaQuin.isoforms | Return RnaQuin isoforms |
| RnaQuin.isoforms-method | Return RnaQuin isoforms |
| score | Return scores |
| score-method | Return scores |
| seqs | Return sequin names |
| seqs-method | Return sequin names |
| std | Return standard deviation |
| std-method | Return standard deviation |
| UserGuideData_5.4.5.1 | Section 5.4.5.1 Assembly Dataset |
| UserGuideData_5.4.6.3 | Gene expression (RnaQuin) |
| UserGuideData_5.6.3 | Differential expression (RnaQuin) |