Package: ABAEnrichment
Type: Package
Title: Gene expression enrichment in human brain regions
Version: 1.4.0
Date: 2016-10-17
Author: Steffi Grote
Maintainer: Steffi Grote <steffi_grote@eva.mpg.de>
Description: The package ABAEnrichment is designed to test for
        enrichment of user defined candidate genes in the set of
        expressed genes in different human brain regions. The core
        function 'aba_enrich' integrates the expression of the
        candidate gene set (averaged across donors) and the structural
        information of the brain using an ontology, both provided by
        the Allen Brain Atlas project. 'aba_enrich' interfaces the
        ontology enrichment software FUNC to perform the statistical
        analyses. Additional functions provided in this package like
        'get_expression' and 'plot_expression' facilitate exploring the
        expression data.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.5), gplots (>= 2.14.2), ABAData (>= 0.99.2)
Depends: R (>= 3.2)
LinkingTo: Rcpp
Suggests: BiocStyle, knitr, testthat
VignetteBuilder: knitr
biocViews: GeneSetEnrichment, GeneExpression
NeedsCompilation: yes
Packaged: 2016-10-18 00:26:01 UTC; biocbuild
Built: R 3.3.1; i386-w64-mingw32; 2016-10-18 00:58:53 UTC; windows
Archs: i386, x64
