# PANDA Algorithm

## Documentation for package ‘pandaR’ version 1.6.0

- DESCRIPTION file.

## Help Pages

pandaR-package | pandaR: Passing Messages between Biological Networks to Refine Predicted Interactions.
calcDegree | Calculate regulatory network degree
calcDegreeDifference | Calculate difference in degrees
importPandaMatlab | Panda Matlab importer
multiplot | Multiple plots
panda | Passing Messages between Biological Networks to Refine Predicted Interactions
pandaR | pandaR: Passing Messages between Biological Networks to Refine Predicted Interactions.
pandaResult | Analysis result from PANDA algorithm on toy data
pandaResultPairs | Analysis result from PANDA algorithm on toy data converted into pairs
pandaToyData | Toy gene expression, motif, and ppi data
plot.panda | Plot.panda
plotCommunityDetection | Community detection plot
plotGraph | Plot graph
plotZ | Comparison of Z scores between two PANDA runs
plotZbyTF | Plot Z by TF out-degree quantiles
print.panda | print.panda
subnetwork | Subnetwork
summary.panda | Summary.panda
targetedGenes | targetedGenes
testMotif | Check motif
topedges | Top edges