ComplexHeatmap
This is the development version of ComplexHeatmap; for the stable release version, see ComplexHeatmap.
Make Complex Heatmaps
Bioconductor version: Development (3.23)
Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.
Maintainer: Zuguang Gu <z.gu at dkfz.de>
Citation (from within R, enter
citation("ComplexHeatmap")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ComplexHeatmap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Sequencing, Software, Visualization |
| Version | 2.27.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (10.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0.0), methods, grid, graphics, stats, grDevices |
| Imports | circlize (>= 0.4.14), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), png, digest, IRanges, matrixStats, foreach, doParallel, codetools |
| System Requirements | |
| URL | https://github.com/jokergoo/ComplexHeatmap https://jokergoo.github.io/ComplexHeatmap-reference/book/ |
See More
| Suggests | testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff, fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12), gridGraphics, gplots, rmarkdown, Cairo, magick |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ComplexHeatmap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ComplexHeatmap |
| Package Short Url | https://bioconductor.org/packages/ComplexHeatmap/ |
| Package Downloads Report | Download Stats |