Mass Spectrometry-Based Single-Cell Proteomics Data Analysis
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Documentation for package ‘scp’ version 1.6.0
Help Pages
| aggregateFeaturesOverAssays | Aggregate features over multiple assays |
| computeMedianCV_SCoPE2 | (Deprecated) Compute the median coefficient of variation (CV) per cell |
| computeSCR | Compute the sample over carrier ratio (SCR) |
| divideByReference | Divide assay columns by a reference column |
| medianCVperCell | Compute the median coefficient of variation (CV) per cell |
| mqScpData | Example MaxQuant/SCoPE2 output |
| normalizeSCP | Normalize single-cell proteomics (SCP) data |
| pep2qvalue | Compute q-values |
| readSCP | Read single-cell proteomics data as a QFeatures object from tabular data and metadata |
| readSingleCellExperiment | Read SingleCellExperiment from tabular data |
| rowDataToDF | Extract the 'rowData' of a 'QFeatures' object to a 'DataFrame' |
| sampleAnnotation | Single cell sample annotation |
| scp1 | Single Cell QFeatures data |