addCNV                  estimate CNV information and add to qseaSet
                        object
addContrast             fit GLMs to reduced model and test for
                        significance
addCoverage             Import sequencing data
addEnrichmentParameters
                        Enrichment analysis
addLibraryFactors       Estimate effective library size
addNewSamples           Extends an exisiting qseaSet by new samples
addOffset               Estimate background reads
addPatternDensity       Infer sequence pattern density values and add
                        to qseaSet object
addSeqPref              Add sequence preference to qseaSet object
createQseaSet           Prepares a qseaSet Object
fitNBglm                Fit GLM for each window
getExampleQseaSet       Simulation of MeDIP seq QSEA set
getPCA                  Principle Component Analysis (PCA) in QSea
isSignificant           Finds Significant Regions
makeTable               Create a Results Table
normMethod              Definition of normalization procedure
plotCNV                 Plots a Heatmap-like Overview of the CNVs
plotCoverage            Plots a genome-browser-like image of a region
plotEnrichmentProfile   Plotting functions for enrichment profiles
plotPCA                 Plots for Principle Component Analysis (PCA) in
                        QSEA
qsea-package            QSEA: Quantitative sequencing enrichment
                        analysis and visualization
qseaGLM-class           qseaGLM class and its methods
qseaPCA-class           qseaPCA class and its methods
qseaSet-class           qseaSet class and its methods
regionStats             Counts the Windows in Regions of Interest
