Interspecies gene mapping
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Documentation for package ‘orthogene’ version 1.2.1
Help Pages
| orthogene-package | 'orthogene': Interspecies gene mapping |
| aggregate_mapped_genes | Aggregate a gene matrix by gene symbols |
| all_genes | Get all genes |
| convert_orthologs | Map genes from one species to another |
| create_background | Create gene background |
| exp_mouse | Gene expression data: mouse |
| exp_mouse_enst | Transcript expression data: mouse |
| gprofiler_orgs | Reference organisms |
| infer_species | Infer species from gene names |
| map_genes | Map genes |
| map_orthologs | Map orthologs |
| map_species | Standardise species names |
| orthogene | 'orthogene': Interspecies gene mapping |
| plot_orthotree | Create a phylogenetic tree of shared orthologs |
| prepare_tree | Prepare a phylogenetic tree |
| report_orthologs | Report orthologs |