Package: msmsTests
Type: Package
Title: LC-MS/MS Differential Expression Tests
Version: 1.34.0
Date: 2013-10-02
Author: Josep Gregori, Alex Sanchez, and Josep Villanueva
Maintainer: Josep Gregori i Font <josep.gregori@gmail.com>
Depends: R (>= 3.0.1), MSnbase, msmsEDA
Imports: edgeR, qvalue
Description: Statistical tests for label-free LC-MS/MS data by spectral counts, to discover differentially expressed proteins between two biological conditions. Three tests are available: Poisson GLM regression, quasi-likelihood GLM regression, and the negative binomial of the edgeR package.The three models admit blocking factors to control for nuissance variables.To assure a good level of reproducibility a post-test filter is available, where we may set the minimum effect size considered biologicaly relevant, and the minimum expression of the most abundant condition.
License: GPL-2
biocViews: ImmunoOncology, Software, MassSpectrometry, Proteomics
git_url: https://git.bioconductor.org/packages/msmsTests
git_branch: RELEASE_3_15
git_last_commit: d657607
git_last_commit_date: 2022-04-26
Date/Publication: 2022-04-26
NeedsCompilation: no
Packaged: 2022-04-26 23:54:57 UTC; biocbuild
Built: R 4.2.0; ; 2022-04-27 09:46:47 UTC; windows
