Package: miaSim
Type: Package
Version: 1.2.0
Authors@R: 
     c(person(given = "Karoline", family = "Faust", role = c("aut"),
              email = "karoline.faust@kuleuven.be"),
       person(given = "Yu", family = "Gao", role = c("aut"),
              email = "gaoyu19920914@gmail.com"),
       person(given = "Emma", family = "Gheysen", role = c("aut"),
              email = "emma.gheysen@student.kuleuven.be"),
       person(given = "Daniel Rios", family = "Garza", role = c("aut"),
              email = "danielrios.garza@kuleuven.be"),
       person(given = "Yagmur", family = "Simsek", role = c("cre", "aut"),
              email = "yagmur.simsek@hsrw.org"),
       person(given = "Leo", family = "Lahti", role = c("aut"),
              email = "leo.lahti@iki.fi",
              comment = c(ORCID = "0000-0001-5537-637X")))
Title: Microbiome Data Simulation
Description: 
    Microbiome time series simulation with generalized Lotka-Volterra model,
    Self-Organized Instability (SOI), and other models. Hubbell's Neutral model
    is used to determine the abundance matrix. The resulting abundance matrix
    is applied to SummarizedExperiment or TreeSummarizedExperiment objects.
License: Artistic-2.0 | file LICENSE
biocViews: Microbiome, Software, Sequencing, DNASeq, ATACSeq, Coverage,
        Network
Encoding: UTF-8
RoxygenNote: 7.1.2
Depends: SummarizedExperiment, TreeSummarizedExperiment
Imports: deSolve, stats, poweRlaw, gtools, S4Vectors, MatrixGenerics
Suggests: rmarkdown, knitr, BiocStyle, testthat
URL: https://github.com/microbiome/miaSim
BugReports: https://github.com/microbiome/miaSim/issues
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/miaSim
git_branch: RELEASE_3_15
git_last_commit: 496a898
git_last_commit_date: 2022-04-26
Date/Publication: 2022-04-26
NeedsCompilation: no
Packaged: 2022-04-26 23:43:02 UTC; biocbuild
Author: Karoline Faust [aut],
  Yu Gao [aut],
  Emma Gheysen [aut],
  Daniel Rios Garza [aut],
  Yagmur Simsek [cre, aut],
  Leo Lahti [aut] (<https://orcid.org/0000-0001-5537-637X>)
Maintainer: Yagmur Simsek <yagmur.simsek@hsrw.org>
Built: R 4.2.0; ; 2022-04-27 09:44:04 UTC; windows
