dd29d7c3fc376480274d2e8ead18439f *DESCRIPTION
db84411d7ca02bdd756e59b7a35efc7a *INDEX
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
d9c81b1589b311e1884baef53ea0c587 *Meta/Rd.rds
9c6fc9444f1d52dca2f8e75b612d7e36 *Meta/features.rds
3d253f3820520da53ca1f499e5bfc69e *Meta/hsearch.rds
d5a6ebbb88c940faaffd13b7f3541bcb *Meta/links.rds
2cfd3e1f96813fb99c8a93eec54906ee *Meta/nsInfo.rds
aa2b6f2395e5a291b341d5504f608315 *Meta/package.rds
defa5cfbb544fefd9678ce602a92686e *Meta/vignette.rds
7d98b948a4de89309e803fa1a3579b81 *NAMESPACE
13ac4ccbc2364c2bc150cd86ffa85b14 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/bambu
eabf55d2b9acf87de83a0d9697cbcb27 *R/bambu.rdb
ff36a507c2c5c19ff327dee7defd761e *R/bambu.rdx
fe99e31589fe109e1b38a9ed64d010a2 *R/sysdata.rdb
712bb346ba90101df9d55ecda53c4bd6 *R/sysdata.rdx
68b329da9893e34099c7d8ad5cb9c940 *citation
cb724242d3c870cc1a642546bb7ea971 *doc/bambu.R
c71c9d14dbb4ae975a83e0462473dd1d *doc/bambu.Rmd
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fd3b082d2fadf304d48038034d616f23 *doc/index.html
aa95917805efcfe9bc76e306208fec1a *extdata/Homo_sapiens.GRCh38.91.annotations-txdb_chr9_1_1000000.sqlite
123638b7a424504dabf19dade96a8868 *extdata/Homo_sapiens.GRCh38.91_chr9_1_1000000.gtf
378f0bb57e44dcf91cd44d879da21bd5 *extdata/Homo_sapiens.GRCh38.dna_sm.primary_assembly_chr9_1_1000000.fa
2653234c35fbb855d298bf75233e4962 *extdata/Homo_sapiens.GRCh38.dna_sm.primary_assembly_chr9_1_1000000.fa.fai
a9d06b3b5d44984714a8be7c5a2ba7c0 *extdata/SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.bam
d016a5e09abcc432c87abe2ffe502662 *extdata/SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.bam.bai
6d8b7488e20bce32f55698428fcfb66f *extdata/SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000_readClassSe.rds
2d577f23c76f205618c2df11abde7dfd *extdata/annotateSpliceOverlapByDist_testQuery.rds
6b222e4604894ad671d70c1a0eab1a97 *extdata/annotateSpliceOverlapByDist_testSubject.rds
6887df79ef31692205b9e3a0e9372f14 *extdata/annotateSpliceOverlapsByDist_refoutput.rds
e5f29b7f4526645e7c3f66f9bda8a152 *extdata/annotationGranges_txdbGrch38_91_chr9_1_1000000.rds
5bfd4a430ef22b0f26e69bbcd77b62fc *extdata/defaultModels.rds
5bb69c64ecc7352c91d28ae3ec379ab3 *extdata/extendedAnnotationGranges_txdbGrch38_91_chr9_1_1000000.rds
239383ea187dfc790ebc45416ad86106 *extdata/readGrgList_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
107e914351d8a5f8971c6813ae64b055 *extdata/seIsoReCombined_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
4829f9504331eadc34b5011ffd54094e *extdata/seIsoReRef_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
df3ce5c6365a8a0aa898d36ce877c58c *extdata/seOutputCombined2_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
b969484d3d6168f2445d2695529f6497 *extdata/seOutputCombinedExtended_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
24dffbcdf3d9801e9a9bd2eb4107b2de *extdata/seOutputCombined_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
72082b0ac232c163ddb6e50d44c77f5d *extdata/seOutputExtended_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
746688e52a6f42826e44594f4b52e54c *extdata/seOutput_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
795bc7372ea3271c93eed151d4b1e70f *extdata/seOutput_denovo_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
80dec5c6bef79e89dfea2528ddfbaaf9 *extdata/seOutput_distTable_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
b46a6320caccf6abf02e49959cbf8f4f *extdata/seOutput_trackReads_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
9d339916e5d15c5555a1ca4fc048c0bb *extdata/seReadClassBS_Stranded_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
baeec56d2287968d0c8365482609a19d *extdata/seReadClassStranded_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
239f6c2e06b2cb93a7bd7b5fcd940fc0 *extdata/seReadClassUnstranded_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
b347b214aa5b6d38a823567fcf74e371 *extdata/seReadClass_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
205eae1e0e78f0a41db5051fb3910551 *extdata/test_annotations.rds
5ee534275f481546e9be710a183c682a *extdata/test_genomeSequence.rds
f856ec1289640efe9e32cbaa7536511f *extdata/test_se.rds
939a73721dec104b87477b58a767e23a *extdata/test_se_scored.rds
f2e58e77f6aa6156e05a673105963e66 *extdata/xgb_model_splice_junction_correction.txt
9abef86ffb62aaa349eb37ab3fb7db1c *extdata/xgb_predictions_splice_junction_correction.txt
b1288780a524ed444995bcf3a1716c60 *help/AnIndex
f07c92b4cc6b6035a9975828971c89a3 *help/aliases.rds
276dd4edc1647a8c230cd76ed0bc2001 *help/bambu.rdb
d8c048b7b608ce45a4b0c48c767943d6 *help/bambu.rdx
4fa57191413ab6d173eb93a9f2e23e2f *help/paths.rds
82219f3a19109fa6a6e55e391e70bece *html/00Index.html
3845aef6126cf18c45937f292f23508c *html/R.css
f7993aae31ea1ed5080ab4080e0a74f4 *libs/x64/bambu.dll
