bambu                   long read isoform reconstruction and
                        quantification
plotBambu               plot.bambu
prepareAnnotations      prepare annotations from txdb object or gtf
                        file
readFromGTF             convert a GTF file into a GRangesList
transcriptToGeneExpression
                        transcript to gene expression
writeBambuOutput        Write bambu results to GTF and
                        transcript/gene-count files
writeToGTF              write GRangeslist into GTF file
