4776267b570182d6505a7b789f12ec84 *DESCRIPTION
05325c57254a46ac5c3d8dd269ce8e69 *INDEX
dd912e6b34798370bef078312ba1373e *Meta/Rd.rds
f027a9efe4d87a35f5be55e1f448410e *Meta/data.rds
9c6fc9444f1d52dca2f8e75b612d7e36 *Meta/features.rds
371e98d36221f9eabf61ab304ebcfb6a *Meta/hsearch.rds
406fad51b8c4a81352ee55e90c30bf48 *Meta/links.rds
f28e821a586b668afce023cbdd96bafc *Meta/nsInfo.rds
cae44989e8e764a8c305fc9b7be4f262 *Meta/package.rds
3aa41456266896e46d57b4b03a4fe75d *Meta/vignette.rds
cf05eddfc4f8fabbfeb6990dd4e6bfb5 *NAMESPACE
3b7748bd558f17b0b296ec6bc9192af8 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/YAPSA
ae2ac503c0e3885e7c415d3c86a9cfd4 *R/YAPSA.rdb
38dfe84b240b0665ca97585a3f66882d *R/YAPSA.rdx
70924c96e4f552a8c90c163acf5971b4 *YAPSA_datasets/cutoffs.rda
20813a4de2bc59103ef74239960a0826 *YAPSA_datasets/cutoffs_pcawg.rda
8dd609f861f4d06425a08b8b01a571a6 *YAPSA_datasets/sigs.rda
f4e56a8d4aaaf817f7fe912c03b14fc7 *YAPSA_datasets/sigs_pcawg.rda
4b9f5e983d7ea469ea0a2b29f3b4656c *data/AlexCosmicValid_sig_df.rda
5773b0248f0d4512e816893db33e17af *data/GenomeOfNl_MutCat.rda
957998fc5a197d63d25cfe5c740cff4d *data/GenomeOfNl_raw.rda
70924c96e4f552a8c90c163acf5971b4 *data/cutoffs.rda
20813a4de2bc59103ef74239960a0826 *data/cutoffs_pcawg.rda
8d2217cdfd41dce00bf577b6611d5a0f *data/exchange_colour_vector.rda
acff4a1276f5033015369a6944b961b5 *data/lymphomaNature2013_mutCat_df.rda
a707e6fe0b59a9c3c73c328feb546a42 *data/lymphoma_Nature2013_raw.rda
d494e4cbe6bcc48fb7381ea849d8dd28 *data/lymphoma_PID.rda
a6f15f9ae8e373ce599a44e9073d2eb0 *data/lymphoma_cohort_LCD_results.rda
0a6400a8c40555ef4a3f70081a46416c *data/lymphoma_test.rda
8dd609f861f4d06425a08b8b01a571a6 *data/sigs.rda
f4e56a8d4aaaf817f7fe912c03b14fc7 *data/sigs_pcawg.rda
220eee09032bc543ce567cc1b0896446 *data/smallCellLungCancerMutCat_NatureGenetics2012.rda
bb0eac89a83bccfde83df534b24d20ed *data/targetCapture_cor_factors.rda
20ee1c98b6eb9668fcdfd6877add87c1 *doc/YAPSA.R
4eecea3fa133da2b306eb137ed241d66 *doc/YAPSA.Rmd
b2fc245ea58956f23f3e3f2332424b0a *doc/YAPSA.html
ef08ff268801903944406dfca25aca31 *doc/index.html
86da0d3d43b09df129eec7db55824307 *doc/vignette_confidenceIntervals.R
6d2938fcf65762a86c1f70e04a9c677e *doc/vignette_confidenceIntervals.Rmd
4b53c0ff56c4d9ed6d4cc21cf794f284 *doc/vignette_confidenceIntervals.html
d26104889b400f4a5c4106b12b5891cc *doc/vignette_exomes.R
3e4b3f68ad1393950df2760bf1bbd3e3 *doc/vignette_exomes.Rmd
cde216a3088353b0691029358ad694f9 *doc/vignette_exomes.html
57cb46f57f713f953107c4ebf2c8e997 *doc/vignette_signature_specific_cutoffs.R
713da5c905c9567c95ca5a844ca93cb0 *doc/vignette_signature_specific_cutoffs.Rmd
386d8e1028446a60e93a86d4bef9ab31 *doc/vignette_signature_specific_cutoffs.html
8800c1f01027a34d596abd6409f7a639 *doc/vignette_stratifiedAnalysis.R
f69e151f572fcd090627b6a0ef8a20e5 *doc/vignette_stratifiedAnalysis.Rmd
102e4faff1a725ad8a8128fabc87d154 *doc/vignette_stratifiedAnalysis.html
01eae264e3cd8a87d633b716b2963ae2 *doc/vignettes_Indel.R
9158f164dc099e7dd60e6f088f21bde8 *doc/vignettes_Indel.Rmd
498a9761c7f2fde9b6cd2ce24b8ec221 *doc/vignettes_Indel.html
89c6eba2c3b5846b45435ab5b77addfa *foreign/annotate_vcf.pl
bcfc276d6945ad64724291808b1eac47 *foreign/kmer_frequencies.pl
310cb56299ca5c0f7931dbe4bd617f1e *help/AnIndex
7d57ac391e827f37155be042c6581498 *help/YAPSA.rdb
e7b711f71206b38a050a6a24515e193e *help/YAPSA.rdx
fe16e1cf9f009c19886f67d707fa03ae *help/aliases.rds
91f649652bd734e62994ddc98513172e *help/paths.rds
accac9beac0f853320a43b3b7774ae25 *html/00Index.html
3845aef6126cf18c45937f292f23508c *html/R.css
