RLSeq: An analysis package for R-loop mapping data
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Documentation for package ‘RLSeq’ version 1.2.0
Help Pages
| analyzeRLFS | Analyze RLFS |
| auxdata | Auxiliary Data |
| available_genomes | Available Genomes |
| checkRLFSAnno | Check RLFS |
| corrAnalyze | Analyze Correlations |
| corrHeatmap | Plot Correlation Results |
| featureEnrich | Test Genomic Feature Enrichment |
| feature_ggplot | Feature ggplot |
| geneAnnotation | Annotate R-Loops with Genes |
| genomeMasks | Genome Masks |
| getChromSizes | Get Chrom Sizes |
| getGSSignal | Get GS Signal |
| getRLFSAnno | Get RLFS |
| peak_stats | Build peak statistics tibble |
| plotEnrichment | Plot Enrichment Test Results |
| plotRLFSRes | Plot RLFS analysis results |
| plotRLRegionOverlap | Plot RL-Region overlap with RLRanges |
| predictCondition | Predict Condition |
| report | RLSeq Report |
| RLRanges | Construct RLRanges Dataset |
| RLRanges-class | Construct RLRanges Dataset |
| RLRangesFromRLBase | Access RLBase samples as RLRanges |
| rlRegionTest | R-Loop region test |
| rlresult | RLSeq Results |
| RLResults | RLSeq Results |
| RLResults-class | RLSeq Results |
| RLSeq | RLSeq |
| tableToRegions | Table to Regions |
| urlExists | Check if URL exists |