NanoMethResult-class    Nanopore Methylation Result
bsseq_to_edger          Convert BSseq object to edgeR methylation
                        matrix
bsseq_to_log_methy_ratio
                        Convert BSseq object to log-methylation-ratio
                        matrix
cluster_regions         Cluster regions by K-means
create_tabix_file       Create a tabix file using methylation calls
exons_to_genes          Convert exon annotation to genes
filter_methy            Create filtered methylation file
get_example_exons_mus_musculus
                        Get example exon annotations for mus musculus
get_exons_homo_sapiens
                        Get exon annotations for homo sapiens
get_exons_mus_musculus
                        Get exon annotations for mus musculus
load_example_nanomethresult
                        Load an example NanoMethResult object
methy_col_names         Column names for methylation data
methy_to_bsseq          Create BSSeq object from methylation tabix file
methy_to_edger          Convert NanoMethResult object to edgeR
                        methylation matrix
plot_agg_regions        Plot aggregate regions
plot_gene               Plot gene
plot_gene_heatmap       Plot gene methylation heatmap
plot_grange             Plot GRanges
plot_grange_heatmap     Plot GRanges heatmap
plot_mds                Plot MDS
plot_pca                Plot PCA
plot_region             Plot region
plot_region_heatmap     Plot region methylation heatmap
query_exons             Query exons
query_methy             Query methylation data
region_methy_stats      Calculate region methylation statistics
