Package: MatrixRider
Type: Package
Title: Obtain total affinity and occupancies for binding site matrices
        on a given sequence
Version: 1.28.0
Date: 2015-11-02
Author: Elena Grassi
Maintainer: Elena Grassi <grassi.e@gmail.com>
Description: Calculates a single number for a whole sequence that
        reflects the propensity of a DNA binding protein to interact
        with it. The DNA binding protein has to be described with a PFM
        matrix, for example gotten from Jaspar.
biocViews: GeneRegulation, Genetics, MotifAnnotation
License: GPL-3
Depends: R (>= 3.1.2)
Imports: methods, TFBSTools, IRanges, XVector, Biostrings
Suggests: RUnit, BiocGenerics, BiocStyle, JASPAR2014
LinkingTo: IRanges, XVector, Biostrings, S4Vectors
NeedsCompilation: yes
git_url: https://git.bioconductor.org/packages/MatrixRider
git_branch: RELEASE_3_15
git_last_commit: 94bb9bd
git_last_commit_date: 2022-04-26
Date/Publication: 2022-04-26
Packaged: 2022-04-26 23:33:12 UTC; biocbuild
Built: R 4.2.0; x86_64-w64-mingw32; 2022-04-27 09:41:33 UTC; windows
ExperimentalWindowsRuntime: ucrt
Archs: x64
