AlignNetworks           Align networks
AlignedPairs            Get aligned node pairs
AnalyzeAlignment        Analyze an alignment
ComputeLinkParameters   Compute link parameters
ComputeM                Compute score matrix M
ComputeNodeParameters   Compute node parameters
ComputeScores           Compute scores
CreateScoreMatrix       Create score matrix
EncodeDirectedGraph     Encode directed graph
GenerateExample         Generate example input data
GetBinNumber            Get bin number
InitialAlignment        Create initial alignment
InvertPermutation       Invert permutation
LinearAssignment        Solve linear assignment problem
MatrixToBin             Convert matrix to bin representation
Permute                 Permute rows and columns of a matrix
Trace                   Calculate trace of a matrix
VectorToBin             Convert vector to bin representation
