COexpression Tables ANalysis
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘COTAN’ version 1.0.0
Help Pages
| add.row.to.meta | add.row.to.meta |
| add.row.to.meta-method | add.row.to.meta |
| automatic.COTAN.object.creation | automatic.COTAN.object.creation |
| automatic.COTAN.object.creation-method | automatic.COTAN.object.creation |
| clean | clean |
| clean-method | clean |
| cotan_analysis | cotan_analysis |
| cotan_analysis-method | cotan_analysis |
| drop.genes.cells | drop.genes.cells |
| drop.genes.cells-method | drop.genes.cells |
| ERCC.cotan | COTAN object |
| ERCCraw | Raw ERCC dataset |
| est.min.parameters | est.min.parameters |
| est.min.parameters-method | est.min.parameters |
| extract.coex | extract.coex |
| extract.coex-method | extract.coex |
| fun_linear | fun_linear |
| get.a | get.a |
| get.a-method | get.a |
| get.cell.number | get.cell.number |
| get.cell.number-method | get.cell.number |
| get.cell.size | get.cell.size |
| get.cell.size-method | get.cell.size |
| get.coex | get.coex |
| get.coex-method | get.coex |
| get.constitutive.genes | get.constitutive.genes This function return the genes expressed in all cells in the dataset. |
| get.constitutive.genes-method | get.constitutive.genes This function return the genes expressed in all cells in the dataset. |
| get.expected.ct | get.expected.ct |
| get.expected.ct-method | get.expected.ct |
| get.GDI | get.GDI |
| get.GDI-method | get.GDI |
| get.gene.coexpression.space | get.gene.coexpression.space |
| get.gene.coexpression.space-method | get.gene.coexpression.space |
| get.genes | get.genes |
| get.genes-method | get.genes |
| get.lambda | get.lambda |
| get.lambda-method | get.lambda |
| get.metadata | get.metadata |
| get.metadata-method | get.metadata |
| get.normdata | get.normdata |
| get.normdata-method | get.normdata |
| get.nu | get.nu |
| get.nu-method | get.nu |
| get.observed.ct | get.observed.ct |
| get.observed.ct-method | get.observed.ct |
| get.pval | get.pval |
| get.pval-method | get.pval |
| get.rawdata | get.rawdata |
| get.rawdata-method | get.rawdata |
| get.subset | get.subset |
| get.subset-method | get.subset |
| initRaw | initRaw |
| initRaw-method | initRaw |
| mat2vec_rfast | mat2vec_rfast |
| mat2vec_rfast-method | mat2vec_rfast |
| plot_GDI | plot_GDI |
| plot_GDI-method | plot_GDI |
| plot_general.heatmap | plot_general.heatmap |
| plot_general.heatmap-method | plot_general.heatmap |
| plot_heatmap | plot_heatmap |
| plot_heatmap-method | plot_heatmap |
| raw.dataset | Raw sample dataset |
| scCOTAN | scCOTAN-class |
| scCOTAN-class | scCOTAN-class |
| vec2mat_rfast | vec2mat_rfast |
| vec2mat_rfast-method | vec2mat_rfast |