normalizeDepth {veloviz} | R Documentation

## Normalizes counts to CPM

### Description

Normalizes raw counts to counts per million

### Usage

    normalizeDepth(counts, depthScale = 1e+06, verbose = TRUE)

### Arguments

`counts` | Read count matrix. The rows correspond to genes, columns correspond to individual cells
`depthScale` | Depth scaling. Using a million for CPM (default: 1e6)
`verbose` | Boolean for verbosity setting (default: TRUE)

### Value

a normalized matrix

### Examples

    data(vel)
    curr <- vel$current

    normalizeDepth(curr)

[Package veloviz version 1.0.0 Index]