getAssayData,Solver-method {trena} | R Documentation

## Retrieve the assay matrix of gene expression data from a Solver object

### Description

Retrieve the assay matrix of gene expression data from a Solver object

### Usage

    ## S4 method for signature 'Solver'
    getAssayData(obj)

### Arguments

`obj` | An object of class Solver

### Value

The assay matrix of gene expression data associated with a Solver object

### Examples

    # Create a Solver object using the included Alzheimer's data and retrieve the matrix
    load(system.file(package="trena", "extdata/ampAD.154genes.mef2cTFs.278samples.RData"))
    targetGene <- "MEF2C"
    candidateRegulators <- setdiff(rownames(mtx.sub), targetGene)
    solver <- Solver(mtx.sub, targetGene, candidateRegulators)
    mtx <- getAssayData(solver)

[Package trena version 1.16.0 Index]