create3Dnetwork {transomics2cytoscape}

R Documentation

Create 3D network view for transomics visualization.

Description

Import multiple KEGG pathways and integrate the pathways into Cy3D renderer

Usage

create3Dnetwork(networkDataDir, networkLayers, stylexml)

Arguments

networkDataDir	Path of a directory to put the network files of the second column of networkLayers TSV.
networkLayers	Path of a TSV file with the 3 columns (layer index, the network file name in networkDataDir, Z-height of the network).
stylexml	Path of a XML file for Cytoscape style

Value

A SUID of the 3D network.

Author(s)

Kozo Nishida

Examples

## Not run: 
networkDataDir <- tempfile(); dir.create(networkDataDir)
networkLayers <- system.file("extdata", "yugi2014.tsv",
    package = "transomics2cytoscape")
stylexml <- system.file("extdata", "transomics.xml",
    package = "transomics2cytoscape")
suid <- create3Dnetwork(networkDataDir, networkLayers, stylexml)

## End(Not run)

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