33e5851c97f7682fb49ddd8ace877e40 *CITATION
a0ef2d67a7a01ca2d7361b899a2a0df3 *DESCRIPTION
df6cead5710b9c19941fec2a0360ec87 *INDEX
2ea572940076ffe4f40e98861e0b26b1 *Meta/Rd.rds
a3742dbdeb73dc20c0f0c53f0c5b0086 *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
7b3e678e29c95f91884b6a06a9c88f3e *Meta/hsearch.rds
26e1560ae134c235d637bafb0624bba3 *Meta/links.rds
080a8f71918f8f37e958f7a9907a005a *Meta/nsInfo.rds
935fef81b24a3acdd08825c89e917b58 *Meta/package.rds
412e8914fdc268b83206a00596cb07b3 *Meta/vignette.rds
ece55ad776f05332bb4264badfd898ac *NAMESPACE
f22cda282aeab9383dd242c9e86ad890 *NEWS.rd
d6c68f1fe41ced6e98a766a3757313da *R/tidybulk
f1eb49ce31da6b14fe4e14e2f2f2673b *R/tidybulk.rdb
729c1462959603023427447990d1c505 *R/tidybulk.rdx
e7e89653515383f26dfd4f7ecde38c25 *Thumbs.db
cd797832922413e3c91e4b893552f2e8 *data/Rdata.rdb
bb876436e086605f065639a43ad28fda *data/Rdata.rds
3d1f254742bcd0bd45a2f682b90fd656 *data/Rdata.rdx
0dac68a90ce863e0a5cd95a0228f06f8 *doc/comparison_with_base_R.R
556de9b78e607f518c17dd2e10e62329 *doc/comparison_with_base_R.Rmd
db450775d396f14d8f75ada71a67861f *doc/comparison_with_base_R.html
bc92e1d0a5eeb783da49526499745a8b *doc/index.html
8f2e5fa8e4cea6694016206ee66a683a *doc/introduction.R
bb965452b35c5a1b3533d68ea96c2830 *doc/introduction.Rmd
021598d7aee82072ec8ca3de4b30c200 *doc/introduction.html
52c72469ba49480e48e17a8e17ea30a2 *doc/manuscript_differential_transcript_abundance.R
c5d38b42c3aa395976b91e00954f11a7 *doc/manuscript_differential_transcript_abundance.Rmd
a0534560317b07d4a1a78245a9e81f78 *doc/manuscript_differential_transcript_abundance.html
d23aa863979f7b7d035b4afe84a1adc5 *doc/manuscript_transcriptional_signatures.R
3cc4cee87f7534c8cc70d16cada5f8ac *doc/manuscript_transcriptional_signatures.Rmd
4499653a55d2302a1839081bd99e3b05 *doc/manuscript_transcriptional_signatures.html
3103e0d76b0f117568bc894a412c48dd *help/+25+3E+25.html
c7610a56b3de09060b130a2828cd5d40 *help/AnIndex
920e6dc151326d556259c2705aeb741d *help/X_cibersort.html
3d5dcbaf1ffbc83d546a30325f26ec95 *help/adjust_abundance+2CRangedSummarizedExperiment-method.html
3d5dcbaf1ffbc83d546a30325f26ec95 *help/adjust_abundance+2CSummarizedExperiment-method.html
3d5dcbaf1ffbc83d546a30325f26ec95 *help/adjust_abundance+2Cspec_tbl_df-method.html
3d5dcbaf1ffbc83d546a30325f26ec95 *help/adjust_abundance+2Ctbl_df-method.html
3d5dcbaf1ffbc83d546a30325f26ec95 *help/adjust_abundance+2Ctidybulk-method.html
3d5dcbaf1ffbc83d546a30325f26ec95 *help/adjust_abundance-methods.html
3d5dcbaf1ffbc83d546a30325f26ec95 *help/adjust_abundance.html
9d2185419d07795a1ff1283ecc441053 *help/aggregate_duplicates+2CRangedSummarizedExperiment-method.html
9d2185419d07795a1ff1283ecc441053 *help/aggregate_duplicates+2CSummarizedExperiment-method.html
9d2185419d07795a1ff1283ecc441053 *help/aggregate_duplicates+2Cspec_tbl_df-method.html
9d2185419d07795a1ff1283ecc441053 *help/aggregate_duplicates+2Ctbl_df-method.html
9d2185419d07795a1ff1283ecc441053 *help/aggregate_duplicates+2Ctidybulk-method.html
9d2185419d07795a1ff1283ecc441053 *help/aggregate_duplicates-methods.html
9d2185419d07795a1ff1283ecc441053 *help/aggregate_duplicates.html
bdf8e3475a01c5edc0cc3645a09b2c89 *help/aliases.rds
dff28413fada6ef305e9b2dd1df866db *help/arrange-methods.html
dff28413fada6ef305e9b2dd1df866db *help/arrange.html
bb2745336e02118c106adae8510a4b9c *help/as_SummarizedExperiment+2Cspec_tbl_df-method.html
bb2745336e02118c106adae8510a4b9c *help/as_SummarizedExperiment+2Ctbl_df-method.html
bb2745336e02118c106adae8510a4b9c *help/as_SummarizedExperiment+2Ctidybulk-method.html
bb2745336e02118c106adae8510a4b9c *help/as_SummarizedExperiment-methods.html
bb2745336e02118c106adae8510a4b9c *help/as_SummarizedExperiment.html
833c6de3cb0facb1a1e33b69f5d1e979 *help/as_matrix.html
a33a14c15b585b93294aa6587a38334b *help/as_tibble.html
113fa9483bdd719ab792644d4c1fae26 *help/bind-methods.html
113fa9483bdd719ab792644d4c1fae26 *help/bind.html
113fa9483bdd719ab792644d4c1fae26 *help/bind_cols.html
113fa9483bdd719ab792644d4c1fae26 *help/bind_rows.html
61ce8b51d63bd030754aaa6706a72e13 *help/breast_tcga_mini_SE.html
9eef7f49479a188429b5d2de854288b9 *help/check_if_counts_is_na.html
04caac25e9a572a035f16825643c0cd5 *help/check_if_duplicated_genes.html
0bfbdd619936141fa6a98f70f6a5625c *help/check_if_wrong_input.html
497ea26a83546b77010d97097722b473 *help/cluster_elements+2CRangedSummarizedExperiment-method.html
497ea26a83546b77010d97097722b473 *help/cluster_elements+2CSummarizedExperiment-method.html
497ea26a83546b77010d97097722b473 *help/cluster_elements+2Cspec_tbl_df-method.html
497ea26a83546b77010d97097722b473 *help/cluster_elements+2Ctbl_df-method.html
497ea26a83546b77010d97097722b473 *help/cluster_elements+2Ctidybulk-method.html
497ea26a83546b77010d97097722b473 *help/cluster_elements-methods.html
497ea26a83546b77010d97097722b473 *help/cluster_elements.html
490dc012fabdc3b9a9222d80e3fae393 *help/counts_SE.html
42310eb7438c06eb293863deeeb8274a *help/counts_ensembl.html
5fb9787842266abf0409db34c35330a2 *help/deconvolve_cellularity+2CRangedSummarizedExperiment-method.html
5fb9787842266abf0409db34c35330a2 *help/deconvolve_cellularity+2CSummarizedExperiment-method.html
5fb9787842266abf0409db34c35330a2 *help/deconvolve_cellularity+2Cspec_tbl_df-method.html
5fb9787842266abf0409db34c35330a2 *help/deconvolve_cellularity+2Ctbl_df-method.html
5fb9787842266abf0409db34c35330a2 *help/deconvolve_cellularity+2Ctidybulk-method.html
5fb9787842266abf0409db34c35330a2 *help/deconvolve_cellularity-methods.html
5fb9787842266abf0409db34c35330a2 *help/deconvolve_cellularity.html
ac66302e297c2739cf4a129f8af7b540 *help/describe_transcript+2CRangedSummarizedExperiment-method.html
ac66302e297c2739cf4a129f8af7b540 *help/describe_transcript+2CSummarizedExperiment-method.html
ac66302e297c2739cf4a129f8af7b540 *help/describe_transcript+2Cspec_tbl_df-method.html
ac66302e297c2739cf4a129f8af7b540 *help/describe_transcript+2Ctbl_df-method.html
ac66302e297c2739cf4a129f8af7b540 *help/describe_transcript+2Ctidybulk-method.html
ac66302e297c2739cf4a129f8af7b540 *help/describe_transcript-methods.html
ac66302e297c2739cf4a129f8af7b540 *help/describe_transcript.html
f3c0789fe612d9859567f8f086d67e6d *help/distinct-methods.html
f3c0789fe612d9859567f8f086d67e6d *help/distinct.html
a33a14c15b585b93294aa6587a38334b *help/do.html
7108aa9603e8b252ede8f7112f246d78 *help/dplyr-methods.html
2adbd3a558be23ef2468d5837293b63b *help/ensembl_symbol_mapping.html
9929fa75a8ba0d6480731bfb5a26b931 *help/ensembl_to_symbol+2Cspec_tbl_df-method.html
9929fa75a8ba0d6480731bfb5a26b931 *help/ensembl_to_symbol+2Ctbl_df-method.html
9929fa75a8ba0d6480731bfb5a26b931 *help/ensembl_to_symbol+2Ctidybulk-method.html
9929fa75a8ba0d6480731bfb5a26b931 *help/ensembl_to_symbol-methods.html
9929fa75a8ba0d6480731bfb5a26b931 *help/ensembl_to_symbol.html
a8163ec7ed73020dfa857e2308625927 *help/figures/SNN_plot-1.png
64de10f38032bcf8874152396bd18c06 *help/figures/plot_cibersort-1.png
4687e2c70de487c5fe5eb17477acf1a5 *help/figures/plot_cluster-1.png
f374332b97e02f54d845b0b3c7cda81d *help/figures/plot_drop-1.png
62ece63f72f5db3a56e64ad92d2acfc6 *help/figures/plot_drop2-1.png
a8fa2b2ccccbd0b251da4fa36c2dfe24 *help/figures/plot_mds-1.png
52ea93842c61e26cb5cdca8012d88e30 *help/figures/plot_normalise-1.png
1dbbf48e59f242115dfc3fbb08b36999 *help/figures/plot_pca-1.png
39cfad5f65a373b962d869a067ccf8b3 *help/figures/plot_rotate_1-1.png
73780ea302283c0a8dafb712e21d61c1 *help/figures/plot_rotate_2-1.png
ca04cfa74eeeda1197c21b64b53a9aba *help/figures/unnamed-chunk-11-1.png
4b0fa0e67132ac9eb6fd132098ed2dcf *help/figures/unnamed-chunk-12-1.png
a84e97bc9839ce2d57041ab913004356 *help/figures/unnamed-chunk-13-1.png
4f0b4ff618a3fafada34d5a344bba9a4 *help/figures/unnamed-chunk-16-1.png
d912d40d427a2971d129572c41ed87fe *help/figures/unnamed-chunk-17-1.png
c76a0b62814524225a6d6172cac551af *help/fill_missing_abundance+2Cspec_tbl_df-method.html
c76a0b62814524225a6d6172cac551af *help/fill_missing_abundance+2Ctbl_df-method.html
c76a0b62814524225a6d6172cac551af *help/fill_missing_abundance+2Ctidybulk-method.html
c76a0b62814524225a6d6172cac551af *help/fill_missing_abundance-methods.html
c76a0b62814524225a6d6172cac551af *help/fill_missing_abundance.html
d668aa151a9fc528161b606e4c646bf0 *help/filter-methods.html
d668aa151a9fc528161b606e4c646bf0 *help/filter.html
fb56e770fb40791cb816fc24aeb1ffac *help/flybaseIDs.html
f81b8751c29e2c038155a095207b0081 *help/full_join.html
d642aa74d7056ab6ec027470d709f483 *help/get_bibliography+2CRangedSummarizedExperiment-method.html
d642aa74d7056ab6ec027470d709f483 *help/get_bibliography+2CSummarizedExperiment-method.html
d642aa74d7056ab6ec027470d709f483 *help/get_bibliography+2Cspec_tbl_df-method.html
d642aa74d7056ab6ec027470d709f483 *help/get_bibliography+2Ctbl-method.html
d642aa74d7056ab6ec027470d709f483 *help/get_bibliography+2Ctbl_df-method.html
d642aa74d7056ab6ec027470d709f483 *help/get_bibliography+2Ctidybulk-method.html
d642aa74d7056ab6ec027470d709f483 *help/get_bibliography-methods.html
d642aa74d7056ab6ec027470d709f483 *help/get_bibliography.html
88426b32772df0343bf1ac70e4c74d3e *help/get_reduced_dimensions_UMAP_bulk.html
8f234be48a80ba98d7f5b8bd139dcbd6 *help/get_reduced_dimensions_UMAP_bulk_SE.html
5a67409eea1bab48e5b34b526872492f *help/group_by-methods.html
5a67409eea1bab48e5b34b526872492f *help/group_by.html
c19dbaa6ac130dd8446ed9a58e074af7 *help/identify_abundant+2CRangedSummarizedExperiment-method.html
c19dbaa6ac130dd8446ed9a58e074af7 *help/identify_abundant+2CSummarizedExperiment-method.html
c19dbaa6ac130dd8446ed9a58e074af7 *help/identify_abundant+2Cspec_tbl_df-method.html
c19dbaa6ac130dd8446ed9a58e074af7 *help/identify_abundant+2Ctbl_df-method.html
c19dbaa6ac130dd8446ed9a58e074af7 *help/identify_abundant+2Ctidybulk-method.html
c19dbaa6ac130dd8446ed9a58e074af7 *help/identify_abundant-methods.html
c19dbaa6ac130dd8446ed9a58e074af7 *help/identify_abundant.html
db8a9ff7a9626aa37696b87b2d6abb02 *help/impute_missing_abundance+2CRangedSummarizedExperiment-method.html
db8a9ff7a9626aa37696b87b2d6abb02 *help/impute_missing_abundance+2CSummarizedExperiment-method.html
db8a9ff7a9626aa37696b87b2d6abb02 *help/impute_missing_abundance+2Cspec_tbl_df-method.html
db8a9ff7a9626aa37696b87b2d6abb02 *help/impute_missing_abundance+2Ctbl_df-method.html
db8a9ff7a9626aa37696b87b2d6abb02 *help/impute_missing_abundance+2Ctidybulk-method.html
db8a9ff7a9626aa37696b87b2d6abb02 *help/impute_missing_abundance-methods.html
db8a9ff7a9626aa37696b87b2d6abb02 *help/impute_missing_abundance.html
f81b8751c29e2c038155a095207b0081 *help/inner_join.html
f81b8751c29e2c038155a095207b0081 *help/join-methods.html
1e9c1cb4266eeba96c449f589e49d1b9 *help/keep_abundant+2CRangedSummarizedExperiment-method.html
1e9c1cb4266eeba96c449f589e49d1b9 *help/keep_abundant+2CSummarizedExperiment-method.html
1e9c1cb4266eeba96c449f589e49d1b9 *help/keep_abundant+2Cspec_tbl_df-method.html
1e9c1cb4266eeba96c449f589e49d1b9 *help/keep_abundant+2Ctbl_df-method.html
1e9c1cb4266eeba96c449f589e49d1b9 *help/keep_abundant+2Ctidybulk-method.html
1e9c1cb4266eeba96c449f589e49d1b9 *help/keep_abundant-methods.html
1e9c1cb4266eeba96c449f589e49d1b9 *help/keep_abundant.html
f3f2cc5ae5e505ca2999219da6bfc0ea *help/keep_variable+2CRangedSummarizedExperiment-method.html
f3f2cc5ae5e505ca2999219da6bfc0ea *help/keep_variable+2CSummarizedExperiment-method.html
f3f2cc5ae5e505ca2999219da6bfc0ea *help/keep_variable+2Cspec_tbl_df-method.html
f3f2cc5ae5e505ca2999219da6bfc0ea *help/keep_variable+2Ctbl_df-method.html
f3f2cc5ae5e505ca2999219da6bfc0ea *help/keep_variable+2Ctidybulk-method.html
f3f2cc5ae5e505ca2999219da6bfc0ea *help/keep_variable-methods.html
f3f2cc5ae5e505ca2999219da6bfc0ea *help/keep_variable.html
7108aa9603e8b252ede8f7112f246d78 *help/left_join.html
7a62b7e38a09024417721209602762f6 *help/log10_reverse_trans.html
30973843e3c492844f37cbbe53c3e9d7 *help/logit_trans.html
2a4214c00b29bff5d16288828258d4b1 *help/mutate-methods.html
2a4214c00b29bff5d16288828258d4b1 *help/mutate.html
cbef5d810b06081de205c6a14ac451db *help/nest-methods.html
cbef5d810b06081de205c6a14ac451db *help/nest.html
e52310e25402184cfa1cd62e55fe1d4f *help/paths.rds
3103e0d76b0f117568bc894a412c48dd *help/pipe.html
645c1d819b8d16ec4137c40618777300 *help/pivot_sample+2CRangedSummarizedExperiment-method.html
645c1d819b8d16ec4137c40618777300 *help/pivot_sample+2CSummarizedExperiment-method.html
645c1d819b8d16ec4137c40618777300 *help/pivot_sample+2Cspec_tbl_df-method.html
645c1d819b8d16ec4137c40618777300 *help/pivot_sample+2Ctbl_df-method.html
645c1d819b8d16ec4137c40618777300 *help/pivot_sample+2Ctidybulk-method.html
645c1d819b8d16ec4137c40618777300 *help/pivot_sample-methods.html
645c1d819b8d16ec4137c40618777300 *help/pivot_sample.html
fbb7cd50a4ed8d6b9fc8329eb10a7f71 *help/pivot_transcript+2CRangedSummarizedExperiment-method.html
fbb7cd50a4ed8d6b9fc8329eb10a7f71 *help/pivot_transcript+2CSummarizedExperiment-method.html
fbb7cd50a4ed8d6b9fc8329eb10a7f71 *help/pivot_transcript+2Cspec_tbl_df-method.html
fbb7cd50a4ed8d6b9fc8329eb10a7f71 *help/pivot_transcript+2Ctbl_df-method.html
fbb7cd50a4ed8d6b9fc8329eb10a7f71 *help/pivot_transcript+2Ctidybulk-method.html
fbb7cd50a4ed8d6b9fc8329eb10a7f71 *help/pivot_transcript-methods.html
fbb7cd50a4ed8d6b9fc8329eb10a7f71 *help/pivot_transcript.html
6aedfcda9e5f93322a2968c7d084dea7 *help/reduce_dimensions+2CRangedSummarizedExperiment-method.html
6aedfcda9e5f93322a2968c7d084dea7 *help/reduce_dimensions+2CSummarizedExperiment-method.html
6aedfcda9e5f93322a2968c7d084dea7 *help/reduce_dimensions+2Cspec_tbl_df-method.html
6aedfcda9e5f93322a2968c7d084dea7 *help/reduce_dimensions+2Ctbl_df-method.html
6aedfcda9e5f93322a2968c7d084dea7 *help/reduce_dimensions+2Ctidybulk-method.html
6aedfcda9e5f93322a2968c7d084dea7 *help/reduce_dimensions-methods.html
6aedfcda9e5f93322a2968c7d084dea7 *help/reduce_dimensions.html
a33a14c15b585b93294aa6587a38334b *help/reexports.html
42289b475d197dcad208e79be19bd840 *help/remove_redundancy+2CRangedSummarizedExperiment-method.html
42289b475d197dcad208e79be19bd840 *help/remove_redundancy+2CSummarizedExperiment-method.html
42289b475d197dcad208e79be19bd840 *help/remove_redundancy+2Cspec_tbl_df-method.html
42289b475d197dcad208e79be19bd840 *help/remove_redundancy+2Ctbl_df-method.html
42289b475d197dcad208e79be19bd840 *help/remove_redundancy+2Ctidybulk-method.html
42289b475d197dcad208e79be19bd840 *help/remove_redundancy-methods.html
42289b475d197dcad208e79be19bd840 *help/remove_redundancy.html
0218f0877a04e541afd6a7d47184e1da *help/rename-methods.html
0218f0877a04e541afd6a7d47184e1da *help/rename.html
f81b8751c29e2c038155a095207b0081 *help/right_join.html
a509e3c121ea566365e66fc272e7f995 *help/rotate_dimensions+2CRangedSummarizedExperiment-method.html
a509e3c121ea566365e66fc272e7f995 *help/rotate_dimensions+2CSummarizedExperiment-method.html
a509e3c121ea566365e66fc272e7f995 *help/rotate_dimensions+2Cspec_tbl_df-method.html
a509e3c121ea566365e66fc272e7f995 *help/rotate_dimensions+2Ctbl_df-method.html
a509e3c121ea566365e66fc272e7f995 *help/rotate_dimensions+2Ctidybulk-method.html
a509e3c121ea566365e66fc272e7f995 *help/rotate_dimensions-methods.html
a509e3c121ea566365e66fc272e7f995 *help/rotate_dimensions.html
f60efb0167336b31d7edc375e455a64b *help/rowwise-methods.html
f60efb0167336b31d7edc375e455a64b *help/rowwise.html
c139c8c357b666c2cc55cc3c8e616205 *help/scale_abundance+2CRangedSummarizedExperiment-method.html
c139c8c357b666c2cc55cc3c8e616205 *help/scale_abundance+2CSummarizedExperiment-method.html
c139c8c357b666c2cc55cc3c8e616205 *help/scale_abundance+2Cspec_tbl_df-method.html
c139c8c357b666c2cc55cc3c8e616205 *help/scale_abundance+2Ctbl_df-method.html
c139c8c357b666c2cc55cc3c8e616205 *help/scale_abundance+2Ctidybulk-method.html
c139c8c357b666c2cc55cc3c8e616205 *help/scale_abundance-methods.html
c139c8c357b666c2cc55cc3c8e616205 *help/scale_abundance.html
84433d18368ab2cd2cb42b1add518927 *help/se.html
e29e39ccbeb01150eba171d4621cc37d *help/se_mini.html
636092de85ebdecd9236228a3bdab195 *help/summarise-methods.html
636092de85ebdecd9236228a3bdab195 *help/summarise.html
03b1d3ce3e217e7909edbd37fdd1f253 *help/symbol_to_entrez.html
86e750092e29f848e23123ae256ebcc7 *help/test_deseq2_df.html
b362671a21a165de1742239a96eabdc3 *help/test_differential_abundance+2CRangedSummarizedExperiment-method.html
b362671a21a165de1742239a96eabdc3 *help/test_differential_abundance+2CSummarizedExperiment-method.html
b362671a21a165de1742239a96eabdc3 *help/test_differential_abundance+2Cspec_tbl_df-method.html
b362671a21a165de1742239a96eabdc3 *help/test_differential_abundance+2Ctbl_df-method.html
b362671a21a165de1742239a96eabdc3 *help/test_differential_abundance+2Ctidybulk-method.html
b362671a21a165de1742239a96eabdc3 *help/test_differential_abundance-methods.html
b362671a21a165de1742239a96eabdc3 *help/test_differential_abundance.html
127d8a671e28e188d9a3db22b4e545ae *help/test_differential_cellularity+2CRangedSummarizedExperiment-method.html
127d8a671e28e188d9a3db22b4e545ae *help/test_differential_cellularity+2CSummarizedExperiment-method.html
127d8a671e28e188d9a3db22b4e545ae *help/test_differential_cellularity+2Cspec_tbl_df-method.html
127d8a671e28e188d9a3db22b4e545ae *help/test_differential_cellularity+2Ctbl_df-method.html
127d8a671e28e188d9a3db22b4e545ae *help/test_differential_cellularity+2Ctidybulk-method.html
127d8a671e28e188d9a3db22b4e545ae *help/test_differential_cellularity-methods.html
127d8a671e28e188d9a3db22b4e545ae *help/test_differential_cellularity.html
9f67b051b1ddbc77268be1704e2a62d0 *help/test_gene_enrichment+2CRangedSummarizedExperiment-method.html
9f67b051b1ddbc77268be1704e2a62d0 *help/test_gene_enrichment+2CSummarizedExperiment-method.html
9f67b051b1ddbc77268be1704e2a62d0 *help/test_gene_enrichment+2Cspec_tbl_df-method.html
9f67b051b1ddbc77268be1704e2a62d0 *help/test_gene_enrichment+2Ctbl_df-method.html
9f67b051b1ddbc77268be1704e2a62d0 *help/test_gene_enrichment+2Ctidybulk-method.html
9f67b051b1ddbc77268be1704e2a62d0 *help/test_gene_enrichment-methods.html
9f67b051b1ddbc77268be1704e2a62d0 *help/test_gene_enrichment.html
6dda02ca907645745a23c9a28355e986 *help/test_gene_overrepresentation+2CRangedSummarizedExperiment-method.html
6dda02ca907645745a23c9a28355e986 *help/test_gene_overrepresentation+2CSummarizedExperiment-method.html
6dda02ca907645745a23c9a28355e986 *help/test_gene_overrepresentation+2Cspec_tbl_df-method.html
6dda02ca907645745a23c9a28355e986 *help/test_gene_overrepresentation+2Ctbl_df-method.html
6dda02ca907645745a23c9a28355e986 *help/test_gene_overrepresentation+2Ctidybulk-method.html
6dda02ca907645745a23c9a28355e986 *help/test_gene_overrepresentation-methods.html
6dda02ca907645745a23c9a28355e986 *help/test_gene_overrepresentation.html
93d1e7fff1c249af681144c7fac5a3ea *help/test_gene_rank+2CRangedSummarizedExperiment-method.html
93d1e7fff1c249af681144c7fac5a3ea *help/test_gene_rank+2CSummarizedExperiment-method.html
93d1e7fff1c249af681144c7fac5a3ea *help/test_gene_rank+2Cspec_tbl_df-method.html
93d1e7fff1c249af681144c7fac5a3ea *help/test_gene_rank+2Ctbl_df-method.html
93d1e7fff1c249af681144c7fac5a3ea *help/test_gene_rank+2Ctidybulk-method.html
93d1e7fff1c249af681144c7fac5a3ea *help/test_gene_rank-methods.html
93d1e7fff1c249af681144c7fac5a3ea *help/test_gene_rank.html
c060832c0388b64d7c378e94eb25c2b9 *help/test_stratification_cellularity+2CRangedSummarizedExperiment-method.html
c060832c0388b64d7c378e94eb25c2b9 *help/test_stratification_cellularity+2CSummarizedExperiment-method.html
c060832c0388b64d7c378e94eb25c2b9 *help/test_stratification_cellularity+2Cspec_tbl_df-method.html
c060832c0388b64d7c378e94eb25c2b9 *help/test_stratification_cellularity+2Ctbl_df-method.html
c060832c0388b64d7c378e94eb25c2b9 *help/test_stratification_cellularity+2Ctidybulk-method.html
c060832c0388b64d7c378e94eb25c2b9 *help/test_stratification_cellularity-methods.html
c060832c0388b64d7c378e94eb25c2b9 *help/test_stratification_cellularity.html
a33a14c15b585b93294aa6587a38334b *help/tibble.html
c087b645cf2637520245d9f7fa94c8f5 *help/tidybulk+2CRangedSummarizedExperiment-method.html
c087b645cf2637520245d9f7fa94c8f5 *help/tidybulk+2CSummarizedExperiment-method.html
c087b645cf2637520245d9f7fa94c8f5 *help/tidybulk+2Cspec_tbl_df-method.html
c087b645cf2637520245d9f7fa94c8f5 *help/tidybulk+2Ctbl_df-method.html
c087b645cf2637520245d9f7fa94c8f5 *help/tidybulk-methods.html
c087b645cf2637520245d9f7fa94c8f5 *help/tidybulk.html
316b17b3ace22b3b9ee819c26248bf46 *help/tidybulk.rdb
1489fafac00de7fa9686a912f13392f9 *help/tidybulk.rdx
09a0f402b33c29305c577c7d989550b0 *help/tidybulk_SAM_BAM+2Ccharacter+2Ccharacter-method.html
09a0f402b33c29305c577c7d989550b0 *help/tidybulk_SAM_BAM-methods.html
09a0f402b33c29305c577c7d989550b0 *help/tidybulk_SAM_BAM.html
cbef5d810b06081de205c6a14ac451db *help/unnest.html
2e5aae3569074ef74ec17f5d5b82f733 *help/vignette_manuscript_signature_boxplot.html
3cb0f1f7672f0ac8eb0e5efb7e9a1dcb *help/vignette_manuscript_signature_tsne.html
7b5b898eabf32e791898ee1c30378997 *help/vignette_manuscript_signature_tsne2.html
838542a86bf3e931f166206f664da924 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
feb889e7220e0d5c0fbfbe9f5e62b0bb *html/X_cibersort.html
7d6a938ef52f0ad3a4310991070c3d63 *html/adjust_abundance-methods.html
2db4b2a3df8144b1a52e15fdda6eef71 *html/aggregate_duplicates-methods.html
5e055d03b753094df63ba2177b5e6a81 *html/arrange-methods.html
134e8efb81be0ff287283a421eb8082d *html/as_SummarizedExperiment-methods.html
e3f72c9b390085c7cc4450a6fd60fc90 *html/as_matrix.html
a5c1ff124b14478e3716174dbff04908 *html/bind-methods.html
55f14f650173ca40fa7f0418f27bf50d *html/breast_tcga_mini_SE.html
7f7f29416eb7017c06247bb1ee88edd1 *html/check_if_counts_is_na.html
8dda7b38403243c2e85fbe2e701c1a92 *html/check_if_duplicated_genes.html
ef86cac9196b9feb4b89faf085725d47 *html/check_if_wrong_input.html
e74da7b8e435132a84b6f2caf3be0aed *html/cluster_elements-methods.html
2757bc3430b0caecb8237fa16bdebdef *html/counts_SE.html
5701ee78c38a3514ae3a67d41dc18a26 *html/counts_ensembl.html
e1ee9e2485b66e9744d4e8f8b1c2075e *html/deconvolve_cellularity-methods.html
da66e79bb8eef7e1b4ddea23d0f85908 *html/describe_transcript-methods.html
5c03be83a7a6c17b45541626d364abab *html/distinct-methods.html
d7fcaaba0a3515b3eae5307fccb8007b *html/dplyr-methods.html
4a0b4b4a30b41c1c73640ce7551034ee *html/ensembl_symbol_mapping.html
6795cdb31fb0b5becde21f67c2868341 *html/ensembl_to_symbol-methods.html
63dec83c4eca5a494d100e1589ae779f *html/fill_missing_abundance-methods.html
c677d2bb586c1249044f93117a3f9c11 *html/filter-methods.html
b03ac18bb8225c5f575c5409699cfdc2 *html/flybaseIDs.html
5bc7bee0e58f7daa5f505328a4e6c476 *html/get_bibliography-methods.html
42e8a9ba8c0bc64475d7ab5bc2fa90e8 *html/get_reduced_dimensions_UMAP_bulk.html
cbda5d0ec89397f84a3d46b4394bc528 *html/get_reduced_dimensions_UMAP_bulk_SE.html
4a6630017f635511361101c22432f374 *html/group_by-methods.html
9ba7387c950f74ac7306af62ed92e1b1 *html/identify_abundant-methods.html
966971590c8d886366ee22b5e44a1098 *html/impute_missing_abundance-methods.html
9393014c7bb9d80bd3ce0280e505f0d3 *html/join-methods.html
ca06445640ecbffe90f1683b56ff90dd *html/keep_abundant-methods.html
b07227430ae6975194f85b7a63ac5cfb *html/keep_variable-methods.html
a727d7a2faac652c6097c3e2edd4744c *html/log10_reverse_trans.html
fc3a9e0ef8d840ee71c1d93d50b89b86 *html/logit_trans.html
db97847d28619c8c57f24d5edbeb7d91 *html/mutate-methods.html
d76febf9889e1c6cee0255dd8ed238c1 *html/nest-methods.html
be5a1ce00128e7d623a475f862426929 *html/pipe.html
1c9ae9fade8d706b020f107f4cf4104f *html/pivot_sample-methods.html
ffaf11489607332dbd0c1ccb9f85d1e6 *html/pivot_transcript-methods.html
d1d1f7e328b230b5804634ad8412af13 *html/reduce_dimensions-methods.html
1fc7e62232de632a3c155dbaea4be8ba *html/reexports.html
a8c3f38d57c8afb1667b1625b0997a81 *html/remove_redundancy-methods.html
4476b09b17ab14785bee89ae67689d85 *html/rename-methods.html
282f0aac659a0272bd64aaf84877f516 *html/rotate_dimensions-methods.html
605de0ebcccd3da3355475d568113afd *html/rowwise-methods.html
0c81410f79f6abc45a4ab4378e0524d7 *html/scale_abundance-methods.html
beccdaabe0ece91d6df23c9153d5ee60 *html/se.html
3ecee832df99c472528e811e640e02e8 *html/se_mini.html
026d696ac28cc35136c91c7fdca7e85f *html/summarise-methods.html
d69b2f2173a9f90bf6c324bab005dc5b *html/symbol_to_entrez.html
3736d7a698ab01bd422f144f2aafd9cd *html/test_deseq2_df.html
88f782b07fcc94e933b9cc95a41fbd11 *html/test_differential_abundance-methods.html
f8668238dc8355744aaaf2495adfdd29 *html/test_differential_cellularity-methods.html
511b705263dc6eac575d1a2768c6a662 *html/test_gene_enrichment-methods.html
9d28040f1b047aa2abd6cde8d907e191 *html/test_gene_overrepresentation-methods.html
eefdac379abb086dff7fff3bf4937395 *html/test_gene_rank-methods.html
8071657322fd0e346aaa793c6250c670 *html/test_stratification_cellularity-methods.html
114067925b2dd5db19e94e321c1e208f *html/tidybulk-methods.html
77f050c78bfefc021b857c69372eb13f *html/tidybulk_SAM_BAM-methods.html
b59b048e319e645936823ec0d0c71b17 *html/vignette_manuscript_signature_boxplot.html
ff93e264573ada8d64d7c14cfb312e0f *html/vignette_manuscript_signature_tsne.html
6427cefd2f8f52fefa6a87d028fda577 *html/vignette_manuscript_signature_tsne2.html
8e304ce15dba94262400d4fd29ee79c1 *logo.png
6d91b871dfa03a9bdb33422a8b81786b *logo.svg
8df7608a2e7bb0580e0157acb2578452 *logo_source_no_outline.svg
e755df491b7a5f70408f5ab3487f3bba *new_SE_usage-01.png
