Assessment of evidence for LOH in spatial transcriptomics pre-processed data using Bayes factor calculations

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Documentation for package ‘tLOH’ version 1.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

aggregateCHRPlot	Visualization of data output from the tLOHCalc function, aggregated per chromosome
alleleFrequencyPlot	Visualization of data output from the tLOHCalc function
cols	Removes outliers
dataframe	Removes outliers
humanGBMsampleAC	Imported dataset of a human glioblastoma spatial transcriptomics sample processed with tLOHImportData.
marginalM1Calc	Calculate marginal of Model 1
marginalM2CalcBHET	Calculation of marginal M2 het
marginalM2CalcBLOH	Marginal M2 Calculation
newValue	Removes outliers
removeOutlierFromCalc	Removes outliers
rows	Removes outliers
tLOHCalc	Assement of evidence for LOH in clusters from spatial transcriptomics data
tLOHDataImport	Import VCF for tLOHCalc