spatialHeatmap

---

Documentation for package ‘spatialHeatmap’ version 2.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

spatialHeatmap-package	spatialHeatmap Spatial Heatmap, Matrix Heatmap, Network
adj_mod	Compute Adjacency Matrix and Identify Modules
aggr_rep	Aggregate "Sample__Condition" Replicates in Data Matrix
aSVG.remote.repo	A list of URLs of remote aSVG repos
com_factor	Combine Factors in Targets File
custom_shiny	Create Customized Shiny App of Spaital Heatmap
deg.table	A table of differentialy-expressed genes (DEGs) detected by different methods
deg_ovl	Plot Overlap of Spatially-Enriched Genes Across Methods
edit_tar	Edit Targets Files
filter_data	Filter the Data Matrix
lis.deg.up.down	A nested list of differentialy-expressed genes (DEGs) detected by different methods
matrix_hm	Matrix Heatmap
network	Visualize a Target Assayed Item in a Network Graph
norm_data	Normalize Sequencing Count Matrix
profile_gene	Plot Gene Expression Profiles in a Data Frame
read_cache	Read R Objects from Cache
read_fr	Import Data from Tabular Files
read_hdf5	Read Data from the Shiny App Database
return_feature	Return aSVG Files Relevant to Target Features
save_cache	Save R Objects in Cache
shiny_shm	Integrated Shiny App
spatialHeatmap	spatialHeatmap Spatial Heatmap, Matrix Heatmap, Network
spatial_enrich	Identify Spatial Feature-Specifcally Expressed Genes
spatial_hm	Create Spatial Heatmaps
submatrix	Subset Target Assayed Items and Their Nearest Neighbors
sub_data	Subset Target Data for Spatial Enrichment
update_feature	Update aSVG Spatial Features
write_hdf5	Construct Database for the Shiny App