slingLineages {slingshot}

R Documentation

Extract the Slingshot lineages

Description

Extract lineages (represented by ordered sets of clusters) identified by slingshot.

Usage

slingLineages(x)

## S4 method for signature 'PseudotimeOrdering'
slingLineages(x)

## S4 method for signature 'SingleCellExperiment'
slingLineages(x)

## S4 method for signature 'SlingshotDataSet'
slingLineages(x)

Arguments

x	an object containing slingshot output.

Value

A list of lineages, represented by ordered sets of clusters.

Examples

data("slingshotExample")
rd <- slingshotExample$rd
cl <- slingshotExample$cl
pto <- slingshot(rd, cl, start.clus = '1')
slingLineages(pto)

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