slingReducedDim {slingshot} | R Documentation

## Extract dimensionality reduction used by Slingshot

### Description

Extract the dimensionality reduction used by `slingshot`.

### Usage

    slingReducedDim(x)

    ## S4 method for signature 'PseudotimeOrdering'
    slingReducedDim(x)

    ## S4 method for signature 'SlingshotDataSet'
    slingReducedDim(x)

    ## S4 method for signature 'SingleCellExperiment'
    slingReducedDim(x)

### Arguments

`x` | an object containing `slingshot` output.

### Value

A matrix of coordinates.

### Examples

    data("slingshotExample")
    rd <- slingshotExample$rd
    cl <- slingshotExample$cl
    pto <- slingshot(rd, cl, start.clus = '1')
    slingReducedDim(pto)

[Package slingshot version 2.2.1 Index]