test_tool_bunny {sevenbridges}

R Documentation

Test tools in rabix/bunny

Description

Test tools locally in rabix/bunny inside docker container

Usage

test_tool_bunny(rabix_tool, inputs)

Arguments

rabix_tool	rabix tool from Tool class
inputs	input parameters declared as json (or yaml) string

Value

bunny stdout

Examples

## Not run: 
inputs <- '{"counts_file": {"class": "File", "path": "./FPKM.txt"}, "gene_names": "BRCA1"}'
rbx <- <define rabix tool>
set_test_env("tengfei/testenv", "<mount_dir>")
test_tool_bunny(rbx, inputs)
## End(Not run)

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