link_what {sevenbridges}

R Documentation

List possible linking methods

Description

List possible linking methods

Usage

link_what(from, to, ...)

## S4 method for signature 'Tool,Tool'
link_what(from, to)

## S4 method for signature 'Tool,SBGWorkflow'
link_what(from, to)

## S4 method for signature 'SBGWorkflow,Tool'
link_what(from, to)

## S4 method for signature 'SBGWorkflow,SBGWorkflow'
link_what(from, to)

Arguments

from	either Tool App or SBGWorkflow object
to	either Tool App or Workflow object
...	more auguments

Details

Given two object of Tool, Flow or App, list all possible input/output match.

Value

A Workflow object

Examples

t1 <- system.file("extdata/app", "tool_unpack_fastq.json", package = "sevenbridges")
t2 <- system.file("extdata/app", "tool_star.json", package = "sevenbridges")
t1 <- convert_app(t1)
t2 <- convert_app(t2)
# check possible link
link_what(t1, t2)
tool.in <- system.file("extdata/app", "tool_unpack_fastq.json", package = "sevenbridges")
flow.in <- system.file("extdata/app", "flow_star.json", package = "sevenbridges")
t1 <- convert_app(tool.in)
f2 <- convert_app(flow.in)
link_what(t1, f2)
tool.in <- system.file("extdata/app", "tool_unpack_fastq.json", package = "sevenbridges")
flow.in <- system.file("extdata/app", "flow_star.json", package = "sevenbridges")
t1 <- convert_app(tool.in)
f2 <- convert_app(flow.in)
link_what(f2, t1)

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