| inferStrain {sesame} | R Documentation |
Infer strain information for mouse array
inferStrain(betas, strain_snp_table = NULL)
betas |
beta value vector from which VAFs are extracted |
strain_snp_table |
if not given download the default from sesameData |
a list of best guess, p-value of the best guess and the probabilities of all strains
sesameDataCache("MM285") # if not done yet
sdf = sesameDataGet('MM285.1.SigDF')
betas = getBetas(dyeBiasNL(noob(sdf)))
inferStrain(betas)