dyeBiasCorrTypeINorm {sesame}

R Documentation

Dye bias correction by matching green and red to mid point

Description

This function compares the Type-I Red probes and Type-I Grn probes and generates and mapping to correct signal of the two channels to the middle. The function takes one single SigDF and returns a SigDF with dye bias corrected.

Usage

dyeBiasCorrTypeINorm(sdf)

dyeBiasNL(sdf)

Arguments

sdf

a SigDF

Value

a SigDF after dye bias correction.

Examples

sesameDataCache("EPIC") # if not done yet
sdf <- sesameDataGet('EPIC.1.SigDF')
sdf.db <- dyeBiasCorrTypeINorm(sdf)
sdf <- sesameDataGet('EPIC.1.SigDF')
sdf <- dyeBiasNL(sdf)

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