7558d0a6325112a032be799b7e2c4c97 *DESCRIPTION
84a06c92b4c7867be07aaeefd406887c *INDEX
d8d3420eabd830f93020973d155441a3 *LICENSE
c7974d5725f555d5b399e3eb51a2a9cf *Meta/Rd.rds
ccf6193e8d03e61afaecc8917a04a74e *Meta/data.rds
104d433669a37420724bd986c19a450b *Meta/features.rds
3a96e0a7f5279068f52c42fada67af18 *Meta/hsearch.rds
87bd18d8edb1e9e65ce1c70a0744ef47 *Meta/links.rds
3493ce9b3c6cc6e2300ceab94589262c *Meta/nsInfo.rds
2fccc745a41af4cef848a27aa0d2da13 *Meta/package.rds
c7861c252749a8f74d79303055f3bb3a *Meta/vignette.rds
d68561bdc6d542a00a17afaec9489477 *NAMESPACE
7dd1e1eefd49fc67647d4767310d099b *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/seqsetvis
9becddb583fdbb5c6fec7ef5f794ab66 *R/seqsetvis.rdb
8964a56d847eacc9d61fcdeeefc04bc6 *R/seqsetvis.rdx
01d2a8762301ae81fefeecefa611e645 *data/Rdata.rdb
2023bd8e0be8d349f619edf29641f7ce *data/Rdata.rds
1492ca8fe371967e879e45d0ecce8e2d *data/Rdata.rdx
5c7723cf9e8e72a6bd2bf4a3f0bed1e8 *doc/index.html
83df4e667d37f73cc1cad6c18b883b60 *doc/seqsetvis_overview.R
30a121d29ad1a6b4303d1c5a0ece4d19 *doc/seqsetvis_overview.Rmd
fdf80f4b2a2eaea480ae063da742face *doc/seqsetvis_overview.html
3a569b0514bea47772ed58ea7ee680b5 *extdata/Bcell_PE.mm10.bam
6f0e6eea2d6f43c314dac53b04b92f6c *extdata/Bcell_PE.mm10.bam.bai
d5dfee2c851a648531785a0b22800b68 *extdata/MCF10AT1_CTCF_FE_random100.bw
3f038f7efadf3753d9e098ed07c74090 *extdata/MCF10AT1_CTCF_random100.narrowPeak
a44fc8011f418bebd4adf40c83358c81 *extdata/MCF10A_CTCF_FE_random100.bw
f5af7f5191e6109f0f41375ca17be1a4 *extdata/MCF10A_CTCF_random100.narrowPeak
8e6bc3a6e4f6b9ea11788d6c560c83a5 *extdata/MCF10CA1_CTCF_FE_random100.bw
8a404bcfffb34b964e37ac846a41788b *extdata/MCF10CA1_CTCF_random100.narrowPeak
9377a87ba8a03c4fa3f02796b185838c *extdata/test.bam
b1e9580cc93f3ffd1e423b9e8057d8f7 *extdata/test.bam.bai
354c0d703108ae08fc48d78d74921f3c *extdata/test_cigar_dt.csv
24b8c190abd3d0733f19c4bde9f6484a *extdata/test_idr.overlapped-peaks.txt
146db0df92a4b1e87cd4cf5a6ea1d7d4 *extdata/test_loading.bdg
2ec29af51cbdd1356bba7f7d87e5883e *extdata/test_loading.bed
4b6555a3a0d7115f2a1b4c3160329623 *extdata/test_loading.broadPeak
2d23892c7f6390215f82156cf3a1c239 *extdata/test_loading.bw
3d4709fedb77f50725178204bf438474 *extdata/test_loading.narrowPeak
58dd624a4df3227b343da1f9efb13587 *extdata/test_loading.seacr.bed
16813ab00f2243841de9f0ffbcc75323 *extdata/test_peaks.bam
a38aaa459e9df222057f28c2ffd1c65c *extdata/test_peaks.bed
8ff2cc311137643c1de7b90c1c6e9a1f *extdata/test_peaks.xls
0e8864b84bee8441ea392e7482e4cc3e *help/AnIndex
58d660ef7b977b625bcb8e8879111ea0 *help/Bcell_peaks.html
79fdec4abff1435470658a6d554a92c0 *help/CTCF_in_10a_bigWig_urls.html
99330722dc8c697be423578e9f9982b8 *help/CTCF_in_10a_data.html
ca6d0dc4617a8cd8e4e8dd7f86472154 *help/CTCF_in_10a_narrowPeak_grs.html
110652eb36ce73f9f3e1523715f55e84 *help/CTCF_in_10a_narrowPeak_urls.html
772a5a0a161376d9107452dd35f77f48 *help/CTCF_in_10a_overlaps_gr.html
4583e4b99b435d4880d637ed4f433a37 *help/CTCF_in_10a_profiles_dt.html
6d49b48b05647c573dd63a4a84660f24 *help/CTCF_in_10a_profiles_gr.html
a43838bb41f5e22364ee139532a941c3 *help/add_cluster_annotation.html
437e460848a29d1ef4b544d001aa6d95 *help/aliases.rds
7b7fe44baa85ae7667549d2b479864a5 *help/append_ynorm.html
f4db93e58829be5c3657e26bdbdd0027 *help/applySpline.html
b89776cc852dd663ac6fdb1e88fec479 *help/assemble_heatmap_cluster_bars.html
1948af0a8b46eb8a32930dfe94f57e33 *help/calc_norm_factors.html
45b94c0560281a464449fc366aaf21c8 *help/centerAtMax.html
6dc3aa57acb421a1481d77ae57a46735 *help/centerFixedSizeGRanges.html
ca8389cc3469762e05a89c98bb042522 *help/centerGRangesAtMax.html
96b2dc784ab14b026b15e8b1506194a7 *help/chromHMM_demo_bw_states_gr.html
a4462d4029101fa578a0fcadda8ad19f *help/chromHMM_demo_chain_url.html
3e81f40acc9f19efd82fb9d068c04c2c *help/chromHMM_demo_data.html
983dee0982449130da8fc768476129f6 *help/chromHMM_demo_overlaps_gr.html
e2f7fb3764d17054257aa55b25cb0e5c *help/chromHMM_demo_segmentation_url.html
24024660b0e32ef69a510b601c1ace75 *help/chromHMM_demo_state_colors.html
c462c8b4f57a66969c3040c5731127f2 *help/chromHMM_demo_state_total_widths.html
6d3b5322e8eeacea96bef98d5d9fa83f *help/clusteringKmeans.html
7e5c621bdbd7f70ec127729cb50d6612 *help/clusteringKmeansNestedHclust.html
1bdb2e4fdc1dd0ac1158d5585bb475e0 *help/col2hex.html
963922ac5c9ca4d4612b830d65b2b307 *help/collapse_gr.html
6609bc3220e9296cbedfff097ab12ac5 *help/convert_collapsed_coord.html
9582030b11e79883cac2c82a655042a1 *help/crossCorrByRle.html
067fcf2e4e4b5307f00b9c9fc24419f7 *help/dot-expand_cigar_dt.html
1661b32a7c534ac3ac681ba60b5a9341 *help/dot-expand_cigar_dt_recursive.html
d1389aa768ca364bf4afad05c6ee34df *help/dot-rm_dupes.html
df7201d79cda15456bb69a1f1d3f2c2c *help/dot-rm_dupesPE.html
f00eb39046d2e364a5f45fa462a8c687 *help/easyLoad_FUN.html
28305c8970d5e06a456bd6e6f364d7ea *help/easyLoad_IDRmerged.html
953dbb1828a3188cd12f40cd23e4ab5c *help/easyLoad_bed.html
868f73a01c43ef267e2bf52bda17ef83 *help/easyLoad_broadPeak.html
92c011305b326bc392d0d459cb775658 *help/easyLoad_narrowPeak.html
fe9c74be2885f5b76fef0b0bd57a8d3d *help/easyLoad_seacr.html
bd764e1008824e9ef96418d6d3030317 *help/expandCigar.html
17d4376ec8232680acac7255e52846e1 *help/fetchBam.html
fde2c89af61c92768e50ed17a3030151 *help/fragLen_calcStranded.html
9a7f6d094837af78666401eb7904b716 *help/fragLen_fromMacs2Xls.html
2cfb9f7090f4898f7fff2a4411f60831 *help/getReadLength.html
51332b67676e0720724a765ba92a18c9 *help/ggellipse.html
1691049a7c687318ec629f28511ba590 *help/harmonize_seqlengths.html
dcbaaa9c64703b64187fbd144709535a *help/make_clustering_matrix.html
ca10b3c1f7c9e2c69a8b268e45acbfa3 *help/merge_clusters.html
adf8117a3d962f2710a97a040c1b98eb *help/paths.rds
15ec8c1fdf919ef7747dc73f4111638b *help/prepare_fetch_GRanges.html
d6d6a31dfb70d531b1084c0dc4142147 *help/prepare_fetch_GRanges_names.html
92b24db9464f1f703dfd5132b4b7aa82 *help/prepare_fetch_GRanges_width.html
35b2df058910cea46d577ce7d9f2ad50 *help/quantileGRangesWidth.html
1eb82b857f173ede6cfd236542b89a74 *help/reorder_clusters_hclust.html
7e2ecc18ce43947ee0d65834b38adfd1 *help/reorder_clusters_manual.html
335ff261e0aea85ad1a914ed7c31ea0d *help/reorder_clusters_stepdown.html
de92f750fa5d644c1681b02bdbe6232c *help/reverse_clusters.html
ba4577f55885cc715b6e3268a8d033dd *help/safeBrew.html
0d74e70c36dfdcf8597d25bcec3b6f14 *help/seqsetvis-package.html
0d74e70c36dfdcf8597d25bcec3b6f14 *help/seqsetvis.html
dfc715db801feea96fa58e5288695ee9 *help/seqsetvis.rdb
b9582e157005889523cd716faa403ebc *help/seqsetvis.rdx
cba2ed97300c7feba0fbea96764ed556 *help/set_list2memb.html
b89d061b40d0afcb0c2403c6f5e7d99b *help/shift_anchor.html
dbb7871e68f896c99cf9ae026fdbdf3a *help/split_cluster.html
51aefbded418d8cd90b3bfe24df9e056 *help/ssvConsensusIntervalSets.html
89dc8a17ebff48a191e5ae577cccfe4f *help/ssvFactorizeMembTable.html
6b13feec886bbf6914c41977b1bd7ace *help/ssvFeatureBars.html
0b345cbe9b1560852f0bf187c1329afa *help/ssvFeatureBinaryHeatmap.html
eda0f73a9d9ffdb825dfb58d2e3b69dc *help/ssvFeatureEuler.html
d26a464eea1366ecacdf5c2cec2e1d7b *help/ssvFeaturePie.html
b34a80d211ae0c8a7149f3c815b25c03 *help/ssvFeatureUpset.html
4f034f56505f9803fe30f2e6ff72378d *help/ssvFeatureVenn.html
8ec4860d26a5c87a20e597c9765b757c *help/ssvFetchBam.html
2af19963d39df2f6246c8c82efb25dac *help/ssvFetchBam.single.html
36e49258380c245c0000b4d0ce4401eb *help/ssvFetchBamPE.html
04bfa991e24b4c6b7ad8f086e9e089f3 *help/ssvFetchBamPE.single.html
6368b43638c66fd8198bbd11e1cf107e *help/ssvFetchBigwig.html
178b9d3ae24f72ca8c465c81b8b55898 *help/ssvFetchBigwig.single.html
c3d0c3c7fdb1c34116da5da5d6414af6 *help/ssvFetchGRanges.html
41cecbfae2fab5defe637fe041e73172 *help/ssvFetchSignal.html
436c815622965c5480a11fb93b376bc1 *help/ssvMakeMembTable+2CDataFrame-method.html
436c815622965c5480a11fb93b376bc1 *help/ssvMakeMembTable+2CGRanges-method.html
436c815622965c5480a11fb93b376bc1 *help/ssvMakeMembTable+2CGRangesList-method.html
436c815622965c5480a11fb93b376bc1 *help/ssvMakeMembTable+2Cdata.frame-method.html
436c815622965c5480a11fb93b376bc1 *help/ssvMakeMembTable+2Clist-method.html
436c815622965c5480a11fb93b376bc1 *help/ssvMakeMembTable+2Cmatrix-method.html
436c815622965c5480a11fb93b376bc1 *help/ssvMakeMembTable-methods.html
436c815622965c5480a11fb93b376bc1 *help/ssvMakeMembTable.html
90e8736841feb14e8ac25e6abbc9d461 *help/ssvOverlapIntervalSets.html
cc248d3ab2f2d5d92ae1835361d0395d *help/ssvSignalBandedQuantiles.html
9aaf73bf57dbe134d389e7f84a632224 *help/ssvSignalClustering.html
6f1046f22d85108151ceec21757904bb *help/ssvSignalHeatmap.ClusterBars.html
3288be8cc4b5e40b30c7832e9ce896c2 *help/ssvSignalHeatmap.html
dd71ce8510e3a1fe04c817e9caa20e18 *help/ssvSignalLineplot.html
b05843120420cd1f1989b36e0e00752d *help/ssvSignalLineplotAgg.html
420ee2d14508634a36311dc3fe4e300e *help/ssvSignalScatterplot.html
a81f87312fc99c520ab2a2019c957357 *help/ssv_mclapply.html
f192cc85cba5004d8c2caf0cee996e0e *help/test_peaks.html
a8c57ec68f7c5d5636138aca617b6ef7 *help/viewGRangesWinSample_dt.html
0b42e6e6954f2e59c7281cb48a5dd0e5 *help/viewGRangesWinSummary_dt.html
a35b1970baea29672de7a9ee8a1c66b2 *help/within_clust_sort.html
abf033c18c680dc73105774f8e8cd500 *html/00Index.html
1c7599effe4aac4fea9da27e50853169 *html/Bcell_peaks.html
be3df3608852be58b0a7c8f71498d161 *html/CTCF_in_10a_bigWig_urls.html
95b288db4140b09b96f36e154f457452 *html/CTCF_in_10a_data.html
4ed6b87c4ce3599dd36cf7cefca611e9 *html/CTCF_in_10a_narrowPeak_grs.html
42784a674d1bc22670bed7637b35c483 *html/CTCF_in_10a_narrowPeak_urls.html
269a72ef0c103500292a71f77ef510da *html/CTCF_in_10a_overlaps_gr.html
55f9dcc5e0213ed2fc47ab5b4d285bec *html/CTCF_in_10a_profiles_dt.html
2a0e5674f7fb67d1b31353af4f81020a *html/CTCF_in_10a_profiles_gr.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
440b9d0a11cf3054878b3e14f5882405 *html/add_cluster_annotation.html
dcaf865f995bb8f6a7bb81f11b8ef55d *html/append_ynorm.html
26f066aa07f8f03edbfd0b7c1b9665fc *html/applySpline.html
80da81afd098c5ad9ddbeb4cc07065b1 *html/assemble_heatmap_cluster_bars.html
9a93dc11d0a893c7e77b15c0dc5338a9 *html/calc_norm_factors.html
1aaffa6ce7d9a7c41a8fc3106f5d0a8e *html/centerAtMax.html
6311f4533eac2f0ae5595958c1caccc0 *html/centerFixedSizeGRanges.html
1c3c01546d804201fb7b1d342541934d *html/centerGRangesAtMax.html
2ed0534ddef8aae2a2da22be4c099430 *html/chromHMM_demo_bw_states_gr.html
73753a315e2d5a6d6dfd6812a9b44889 *html/chromHMM_demo_chain_url.html
da250f3ddb9e6022d74c6a7f76a154e7 *html/chromHMM_demo_data.html
4020aa49f04e67788ec879d96284c564 *html/chromHMM_demo_overlaps_gr.html
2ce0fbf47687562894c6e5a8149cfe9c *html/chromHMM_demo_segmentation_url.html
aa6fd2ce6aa7913e8c20db8f13c975bf *html/chromHMM_demo_state_colors.html
daf0476fb32c839bf26bab922548140c *html/chromHMM_demo_state_total_widths.html
2fd4b16118b76857e2ec7794409fd5ab *html/clusteringKmeans.html
4b76f25e5c622591971a09b4afa70b81 *html/clusteringKmeansNestedHclust.html
463ffdcfa555cccfc9a1fc90670611ec *html/col2hex.html
d6084632e300ee625bb957524f41f6e6 *html/collapse_gr.html
e836a2e5d0904f634bb2a45b3e9b8da3 *html/convert_collapsed_coord.html
f1406d613f3d7b171a39c051e0e32eab *html/crossCorrByRle.html
fea0f383af85fe316df75ae935d32579 *html/dot-expand_cigar_dt.html
8230f63138cf0cc20e3489085e51768f *html/dot-expand_cigar_dt_recursive.html
29cd6364ea5f3a6aac7ea301f8a31d89 *html/dot-rm_dupes.html
5a0df03f4db850692c9c1bf75a41fd66 *html/dot-rm_dupesPE.html
7be6a91460ed065a1cb57ae5b36c5b95 *html/easyLoad_FUN.html
7f946c3e96455bcd0ccd36c3cfc3ec4c *html/easyLoad_IDRmerged.html
c63ef6f313c476b060b68447a45a506d *html/easyLoad_bed.html
29f496c4c9c98cf64ae6586c64a6b5b8 *html/easyLoad_broadPeak.html
524c8d2c910f11c7305f6b7014b4b91a *html/easyLoad_narrowPeak.html
5dad2ffe3be947ab2d53ffd838705af6 *html/easyLoad_seacr.html
75d0ea2af0377af0d89809aa939016be *html/expandCigar.html
9dc282c8fb1eebfdcc9b03caef064c28 *html/fetchBam.html
5aa7b5e4c7e28ff17dd1246ad56220cd *html/fragLen_calcStranded.html
5bee7dd979e6f20fc0f9002cc1b61cc4 *html/fragLen_fromMacs2Xls.html
ec97cca4e60c0988f9670111ec248cd4 *html/getReadLength.html
9059aa2039155a07bc06888445cd88e0 *html/ggellipse.html
9a7cbb534d66fd99080e37584acc64f5 *html/harmonize_seqlengths.html
b8b868de0e656cbcb7f0f4bf9a77f2f1 *html/make_clustering_matrix.html
1f54911e5a8bcadf18ca3c8da0068d3b *html/merge_clusters.html
5b1ee856570bd0534d4f71897467cc12 *html/prepare_fetch_GRanges.html
bbb592daee7e425f022a31c82d860fb8 *html/prepare_fetch_GRanges_names.html
4e7669f902faa5c8caf03f277a8c20e1 *html/prepare_fetch_GRanges_width.html
21c6e6411aaa8c2b330a3d6e10d4cbb3 *html/quantileGRangesWidth.html
0db7ce22c0c1f689948ff0303b51ffe5 *html/reorder_clusters_hclust.html
fb7ed976ef895b2a09f3437976cd123c *html/reorder_clusters_manual.html
c3d926de6f17dec10683c710c24d6798 *html/reorder_clusters_stepdown.html
f6bf9750c9dd3ad5d2a51b7172fd3082 *html/reverse_clusters.html
3acd2a24e4bd4489a9f1237d20e83d12 *html/safeBrew.html
5bf2daff8b3e5a3b04490f57087e00f4 *html/seqsetvis-package.html
0055803c4ddf2dba7b6002402ea7d510 *html/set_list2memb.html
ea49df394f5212c0240a6c1f671ad461 *html/shift_anchor.html
f5f8586e66a5976caa06ce4e5920731e *html/split_cluster.html
adc2fb350125e61f286fc722c9db18a3 *html/ssvConsensusIntervalSets.html
1c88363d9d6ffef0e376bccf99bd675b *html/ssvFactorizeMembTable.html
3b27c35c98d9de7be20f65a0bb28f9cb *html/ssvFeatureBars.html
022f6d7364aeaae2313b52f0577c0c47 *html/ssvFeatureBinaryHeatmap.html
d29e60d24362be34554b647a04898a69 *html/ssvFeatureEuler.html
39f6a6de447a8dec19410c932702c57b *html/ssvFeaturePie.html
5e98f067ced66376e3a0faaeba60d948 *html/ssvFeatureUpset.html
ea8fb813faaac659c2f4f699e32c14f6 *html/ssvFeatureVenn.html
c7dc646301e9747e27b3990da1e3e8c4 *html/ssvFetchBam.html
5ce749b4eadaf247f6d95a1605ecfa75 *html/ssvFetchBam.single.html
ae1063fda3e4aeb65145d518ac0cc6e4 *html/ssvFetchBamPE.html
efc04c8d0fecbb083411bf0fbe56c6e5 *html/ssvFetchBamPE.single.html
39309f1e96ce0d15778d993a88703bfe *html/ssvFetchBigwig.html
ded20edc45b4fa1e91701f0140aa2a59 *html/ssvFetchBigwig.single.html
ea5d7960656995336b3613cc22837273 *html/ssvFetchGRanges.html
1dbdbbbe5ed024a0a474518f9bd1bfcc *html/ssvFetchSignal.html
e1c623fb21622c8119d9cee227dd0e9b *html/ssvMakeMembTable-methods.html
bea781ab0c4e47c8e755f18b6a913d06 *html/ssvOverlapIntervalSets.html
d96dc69b9e4ce1abdd08673c12cc87ff *html/ssvSignalBandedQuantiles.html
8f1c08031ac128ae2503c35fb51126e6 *html/ssvSignalClustering.html
65c2c5f996d88e7a08fe44a0a5004f05 *html/ssvSignalHeatmap.ClusterBars.html
ee448bdea23f733e71acb31b474da9ce *html/ssvSignalHeatmap.html
17d7433259aa03e2f2d021d986ca88fe *html/ssvSignalLineplot.html
876db3285547c5142fc29a6c010ede76 *html/ssvSignalLineplotAgg.html
eabc27d63cae85a63073a9a56fe2fc56 *html/ssvSignalScatterplot.html
9e5afa9db444f1a35b113bc4ec45b759 *html/ssv_mclapply.html
226a1576e77d3b8e2767d5f760eaabb5 *html/test_peaks.html
b4b8b7ff3667044dfe6a3d3d4a382aa6 *html/viewGRangesWinSample_dt.html
53b609f905cf1046f8d045a0adeb9291 *html/viewGRangesWinSummary_dt.html
6e3d0e7a990992b313176f418e6d9a53 *html/within_clust_sort.html
