plotCNProfile {seqCNA} | R Documentation

## Plots the profile of a `SeqCNAInfo-class` object.

### Description

The plotted elements depend on the processing applied on the `SeqCNAInfo-class` object.

### Usage

    plotCNProfile(rco, folder = NULL)

### Arguments

`rco` | A `SeqCNAInfo-class` object.
`folder` | Path to the folder where the plots with the output from the `SeqCNAInfo-class` object are to be generated. If no folder is indicated or does not exist, plots will be displayed within R.

### Value

Nothing is returned from this function. Check the `folder` folder for a file called `seqnorm_out.jpg`.

### Author(s)

David Mosen-Ansorena

### Examples

    data(seqsumm_HCC1143)
    rco = readSeqsumm(tumour.data=seqsumm_HCC1143)
    rco = applyFilters(rco, 0, 1, 0, 2, FALSE, plots=FALSE)
    rco = runSeqnorm(rco, plots=FALSE)
    rco = runGLAD(rco)
    rco = applyThresholds(rco, seq(-0.9,4,by=0.9), 1)

    plotCNProfile(rco)

[Package seqCNA version 1.40.0 Index]