read_profile {seqCAT}

R Documentation

Read SNV profile

Description

Read an SNV profile stored on disk.

Usage

read_profile(file, sample_name = NULL)

Arguments

file	The SNV profile to be read (path).
sample_name	Sample name to be added; overrides profile sample if it already exists (character).

Details

This is a function for reading SNV profiles created from VCF files that were stored on disk.

Value

A data frame.

Examples

# Path to test data
profile = system.file("extdata",
                      "test_1.profile.txt.gz",
                      package = "seqCAT")

# Read test profile
profile <- read_profile(profile)

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