R: Format the loaded counts data

range_counts {segmenter}

R Documentation

Format the loaded counts data

The function takes the data.frames of the loaded counts data and format them into GRanges or SummarizedExperiment objects.

range_counts(
  counts,
  features,
  return = "GRanges",
  tidy = FALSE,
  average = FALSE,
  marks
)

`counts`	A `matrix` of the `read_bam_file` output.
`features`	A `GRanges`. That was used to count the bam files.
`return`	A string. Possible values are `GRanges` (default) or `SummarizedExperiment`.
`tidy`	A `logical`. Default is `TRUE`. Whether to tidy the metadata columns of the `GRanges` object.
`average`	A `logical`. Default is `FALSE`. Whether to average the counts by `marks` before building the object.
`marks`	A `character` vector. The length shoud equal the numbe of columns in `counts` and is used for averaging and renaming the matrix columns.

GRanges (default) or SummarizedExperiment.

[Package segmenter version 1.0.0 Index]