range_bins {segmenter}

R Documentation

Format the loaded binarized data

Description

The function takes the data.frames of the loaded binarized data files and format them into GRanges or SummarizedExperiment objects.

Usage

range_bins(bins, chromsizefile, binsize, return = "GRanges", tidy = TRUE)

Arguments

bins	A list of the read_bins_file output.
chromsizefile	A string. The path to the chromosomes sizes file.
binsize	An integer. The number in bp used to generate binarized files.
return	A string. Possible values are GRanges (default) or SummarizedExperiment.
tidy	A logical. Default is TRUE. Whether to tidy the metadata columns of the GRanges object.

Value

GRanges (default) or SummarizedExperiment.

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