4a45c71799006d8754b805cda43ab5a6 *CITATION
499626d4b092e6453afc2cfb1c97e04b *DESCRIPTION
b5c91cc02b3ad07f944ceb94e3da4097 *INDEX
730e08660102a847aab2feb121a9edd9 *Meta/Rd.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
68ab574f366e8b9da3df2b6e97894e70 *Meta/hsearch.rds
e72a6cf18b4703fe442de1359892786b *Meta/links.rds
b64b39d31e98db9bc375a622d4e81a51 *Meta/nsInfo.rds
e418f41057355d536d94fec313bfee0e *Meta/package.rds
b9ab1dc9ba01d716007e6e965dba61bd *Meta/vignette.rds
24b10496275957077a5115254fcc55e3 *NAMESPACE
058dcad07d0af4d3b094cb4f9cb34eb2 *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/scater
78d3b1b025c9e2c71a207c232417b1c9 *R/scater.rdb
84b49f475d603224bca5b648d5785474 *R/scater.rdx
d6df5abf684d7b99c9ffe8e83f548c28 *doc/index.html
e273b465b5fbf2d16d060f00a7ae295c *doc/overview.R
32e56d5eb4b742f2e0cd98cf07542fda *doc/overview.Rmd
7622ed27723ce18c67d80ea87466daf2 *doc/overview.html
3d40cf0b203a6a530232049e9de1cab4 *help/AnIndex
1be5b33c924114ea235514afe31889f3 *help/Reduced+20dimension+20plots.html
5d4699856024e3649d15c39c71aa5927 *help/SCESet-class.html
5d4699856024e3649d15c39c71aa5927 *help/SCESet.html
b9251dc73322b8fe89bedba2daab9915 *help/accessors.html
a33a14c15b585b93294aa6587a38334b *help/addPerCellQC.html
a33a14c15b585b93294aa6587a38334b *help/addPerFeatureQC.html
a33a14c15b585b93294aa6587a38334b *help/aggregateAcrossCells.html
a33a14c15b585b93294aa6587a38334b *help/aggregateAcrossFeatures.html
5053a1e499dc1d00bae9e8bddc96be2e *help/aliases.rds
327879d1dde7590c8c2c7d5eff31b504 *help/annotateBMFeatures.html
e12ae5880ce80a771ced9932b3a9f713 *help/bootstraps+2CSingleCellExperiment-method.html
e12ae5880ce80a771ced9932b3a9f713 *help/bootstraps+3C-+2CSingleCellExperiment+2Carray-method.html
e12ae5880ce80a771ced9932b3a9f713 *help/bootstraps+3C-.html
e12ae5880ce80a771ced9932b3a9f713 *help/bootstraps.html
a33a14c15b585b93294aa6587a38334b *help/calculateAverage.html
a33a14c15b585b93294aa6587a38334b *help/calculateCPM.html
036573ca0f25a80c5e93448790587dc5 *help/calculateDiffusionMap+2CANY-method.html
036573ca0f25a80c5e93448790587dc5 *help/calculateDiffusionMap+2CSingleCellExperiment-method.html
036573ca0f25a80c5e93448790587dc5 *help/calculateDiffusionMap+2CSummarizedExperiment-method.html
036573ca0f25a80c5e93448790587dc5 *help/calculateDiffusionMap.html
a33a14c15b585b93294aa6587a38334b *help/calculateFPKM.html
44a5d044690857f84eebf4b7487bedc2 *help/calculateMDS+2CANY-method.html
44a5d044690857f84eebf4b7487bedc2 *help/calculateMDS+2CSingleCellExperiment-method.html
44a5d044690857f84eebf4b7487bedc2 *help/calculateMDS+2CSummarizedExperiment-method.html
44a5d044690857f84eebf4b7487bedc2 *help/calculateMDS.html
9b633af12560a5c13daf97b1d8017e3c *help/calculateMultiUMAP+2CANY-method.html
9b633af12560a5c13daf97b1d8017e3c *help/calculateMultiUMAP+2CSingleCellExperiment-method.html
9b633af12560a5c13daf97b1d8017e3c *help/calculateMultiUMAP+2CSummarizedExperiment-method.html
9b633af12560a5c13daf97b1d8017e3c *help/calculateMultiUMAP.html
ce994f7051e855fadabe0ceb7ba35217 *help/calculateNMF+2CANY-method.html
ce994f7051e855fadabe0ceb7ba35217 *help/calculateNMF+2CSingleCellExperiment-method.html
ce994f7051e855fadabe0ceb7ba35217 *help/calculateNMF+2CSummarizedExperiment-method.html
ce994f7051e855fadabe0ceb7ba35217 *help/calculateNMF.html
3653cf8ddf2af32d0804153bba9eab5d *help/calculatePCA+2CANY-method.html
3653cf8ddf2af32d0804153bba9eab5d *help/calculatePCA+2CSingleCellExperiment-method.html
3653cf8ddf2af32d0804153bba9eab5d *help/calculatePCA+2CSummarizedExperiment-method.html
3653cf8ddf2af32d0804153bba9eab5d *help/calculatePCA.html
dac9507fbdb50dc974595cda71e1ea15 *help/calculateQCMetrics.html
a33a14c15b585b93294aa6587a38334b *help/calculateTPM.html
4e959dd25d750e0f591f32076d3c5662 *help/calculateTSNE+2CANY-method.html
4e959dd25d750e0f591f32076d3c5662 *help/calculateTSNE+2CSingleCellExperiment-method.html
4e959dd25d750e0f591f32076d3c5662 *help/calculateTSNE+2CSummarizedExperiment-method.html
4e959dd25d750e0f591f32076d3c5662 *help/calculateTSNE.html
311721a9d3f49417dd7d425e62a19036 *help/calculateUMAP+2CANY-method.html
311721a9d3f49417dd7d425e62a19036 *help/calculateUMAP+2CSingleCellExperiment-method.html
311721a9d3f49417dd7d425e62a19036 *help/calculateUMAP+2CSummarizedExperiment-method.html
311721a9d3f49417dd7d425e62a19036 *help/calculateUMAP.html
dac9507fbdb50dc974595cda71e1ea15 *help/centreSizeFactors.html
a33a14c15b585b93294aa6587a38334b *help/computeLibraryFactors.html
a33a14c15b585b93294aa6587a38334b *help/computeMedianFactors.html
dac9507fbdb50dc974595cda71e1ea15 *help/defunct.html
b9251dc73322b8fe89bedba2daab9915 *help/exprs+2CSingleCellExperiment-method+2C.html
b9251dc73322b8fe89bedba2daab9915 *help/exprs+3C-+2CSingleCellExperiment+2CANY-method.html
b9251dc73322b8fe89bedba2daab9915 *help/exprs.html
b9251dc73322b8fe89bedba2daab9915 *help/fpkm+2CSingleCellExperiment-method.html
b9251dc73322b8fe89bedba2daab9915 *help/fpkm+3C-+2CSingleCellExperiment+2CANY-method.html
b9251dc73322b8fe89bedba2daab9915 *help/fpkm+3C-.html
b9251dc73322b8fe89bedba2daab9915 *help/fpkm.html
327879d1dde7590c8c2c7d5eff31b504 *help/getBMFeatureAnnos.html
1198a51f36fbeaa4d17088e56412290d *help/getExplanatoryPCs.html
2cd0e301b44dec23ceb7cacd9fa949fb *help/getVarianceExplained+2CANY-method.html
2cd0e301b44dec23ceb7cacd9fa949fb *help/getVarianceExplained+2CSummarizedExperiment-method.html
2cd0e301b44dec23ceb7cacd9fa949fb *help/getVarianceExplained.html
86d5444230b32503e5cb04ae62beeca3 *help/ggcells.html
86d5444230b32503e5cb04ae62beeca3 *help/ggfeatures.html
86d5444230b32503e5cb04ae62beeca3 *help/ggsce.html
a33a14c15b585b93294aa6587a38334b *help/isOutlier.html
a33a14c15b585b93294aa6587a38334b *help/librarySizeFactors.html
a33a14c15b585b93294aa6587a38334b *help/logNormCounts.html
a33a14c15b585b93294aa6587a38334b *help/makePerCellDF.html
a33a14c15b585b93294aa6587a38334b *help/makePerFeatureDF.html
a33a14c15b585b93294aa6587a38334b *help/medianSizeFactors.html
a33a14c15b585b93294aa6587a38334b *help/mockSCE.html
a3b6a777d81e8dfea87cd00d6f1cb890 *help/multiplot.html
23a388ddedd1a6225ba79830104ba04b *help/nexprs+2CANY-method.html
23a388ddedd1a6225ba79830104ba04b *help/nexprs+2CSummarizedExperiment-method.html
23a388ddedd1a6225ba79830104ba04b *help/nexprs.html
b9251dc73322b8fe89bedba2daab9915 *help/norm_exprs+2CSingleCellExperiment-method.html
b9251dc73322b8fe89bedba2daab9915 *help/norm_exprs+3C-+2CSingleCellExperiment+2CANY-method.html
b9251dc73322b8fe89bedba2daab9915 *help/norm_exprs+3C-.html
b9251dc73322b8fe89bedba2daab9915 *help/norm_exprs.html
dac9507fbdb50dc974595cda71e1ea15 *help/normalize+2CSingleCellExperiment-method.html
a33a14c15b585b93294aa6587a38334b *help/normalizeCounts.html
a33a14c15b585b93294aa6587a38334b *help/numDetectedAcrossCells.html
a33a14c15b585b93294aa6587a38334b *help/numDetectedAcrossFeatures.html
5ff0ba06c7e7ca4f9c14d3232acaa901 *help/paths.rds
a33a14c15b585b93294aa6587a38334b *help/perCellQCMetrics.html
a33a14c15b585b93294aa6587a38334b *help/perFeatureQCMetrics.html
ec07c947212a38667ed08d286807c3b7 *help/plotColData.html
1be5b33c924114ea235514afe31889f3 *help/plotDiffusionMap.html
277beb52e5a12d2760b4fb3c545d5a04 *help/plotDots.html
9cec415588d33b7b633462d5b86ece4a *help/plotExplanatoryPCs.html
db331c72707660c13ea673b2f1eb7185 *help/plotExplanatoryVariables.html
1f65d2292e5b3632112d9e2bb8652c72 *help/plotExpression.html
dde1a6499af4094f06b0220dbe1f1483 *help/plotGroupedHeatmap.html
b597e5dbb3c8c2d0d5b4939bec597dff *help/plotHeatmap.html
c3a365e95959b2526f41084e4efcdf21 *help/plotHighestExprs.html
1be5b33c924114ea235514afe31889f3 *help/plotMDS.html
1be5b33c924114ea235514afe31889f3 *help/plotNMF.html
1be5b33c924114ea235514afe31889f3 *help/plotPCA+2CSingleCellExperiment-method.html
1be5b33c924114ea235514afe31889f3 *help/plotPCA.html
1be5b33c924114ea235514afe31889f3 *help/plotPCASCE.html
43b6f458fbb475f693c79960a362bdeb *help/plotPlatePosition.html
933198f69f0e012211393b06013896c2 *help/plotRLE+2CSingleCellExperiment-method.html
933198f69f0e012211393b06013896c2 *help/plotRLE.html
0be7d7b514c725e9e91ee5840a5327c0 *help/plotReducedDim.html
2037a50829c7dfc3f1b4de5fcd3de6d4 *help/plotRowData.html
4e4e34c833d1f8ed8eaa6dee6e14f879 *help/plotScater.html
1be5b33c924114ea235514afe31889f3 *help/plotTSNE.html
1be5b33c924114ea235514afe31889f3 *help/plotUMAP.html
1be5b33c924114ea235514afe31889f3 *help/plot_reddim.html
a33a14c15b585b93294aa6587a38334b *help/quickPerCellQC.html
a33a14c15b585b93294aa6587a38334b *help/readSparseCounts.html
a33a14c15b585b93294aa6587a38334b *help/reexports.html
5c5b78ea7b5acb4183a9fe8ce104da22 *help/retrieveCellInfo.html
c499ebdb193344d9bd3d7bbbe1131b10 *help/retrieveFeatureInfo.html
1e79ae9667b5461bdabed67535aa59a4 *help/runColDataPCA.html
036573ca0f25a80c5e93448790587dc5 *help/runDiffusionMap.html
44a5d044690857f84eebf4b7487bedc2 *help/runMDS.html
9b633af12560a5c13daf97b1d8017e3c *help/runMultiUMAP.html
ce994f7051e855fadabe0ceb7ba35217 *help/runNMF.html
3653cf8ddf2af32d0804153bba9eab5d *help/runPCA+2CSingleCellExperiment-method.html
3653cf8ddf2af32d0804153bba9eab5d *help/runPCA.html
4e959dd25d750e0f591f32076d3c5662 *help/runTSNE.html
311721a9d3f49417dd7d425e62a19036 *help/runUMAP.html
56c6a190a856364fa1f21a8195dbfcb7 *help/scater-pkg.html
32f46afe4796a845b66c781c42801962 *help/scater-plot-args.html
77f9bb26c736ea649fd65331305fe6d1 *help/scater.rdb
2b8666cdf7ebd7cc82e0701835eda6a9 *help/scater.rdx
b9251dc73322b8fe89bedba2daab9915 *help/stand_exprs+2CSingleCellExperiment-method+2C.html
b9251dc73322b8fe89bedba2daab9915 *help/stand_exprs+3C-+2CSingleCellExperiment+2CANY-method.html
b9251dc73322b8fe89bedba2daab9915 *help/stand_exprs+3C-.html
b9251dc73322b8fe89bedba2daab9915 *help/stand_exprs.html
a33a14c15b585b93294aa6587a38334b *help/sumCountsAcrossCells.html
a33a14c15b585b93294aa6587a38334b *help/sumCountsAcrossFeatures.html
b498205200236991c316a556e05a7d48 *help/toSingleCellExperiment.html
a33a14c15b585b93294aa6587a38334b *help/uniquifyFeatureNames.html
b498205200236991c316a556e05a7d48 *help/updateSCESet.html
eecf71d09ac9f8e7121e0a608740c7e7 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
907be2e125149384ec71ff71995f1b16 *html/SCESet.html
d034ed335e7a3a841d83e50a31663fcd *html/accessors.html
ad5c4c6819abfe4e3d2bad4d497c043a *html/annotateBMFeatures.html
bd3af5a3e0bc39903a22d70274b4554f *html/bootstraps.html
dab8486653aff2c002add8f95f2bb14e *html/defunct.html
d631f5a5666271306a1764ea7d6dba66 *html/getExplanatoryPCs.html
a558ff17a5509f795997f74f040c470c *html/getVarianceExplained.html
b66d0f61cec0be402e2ad787b8d75e4d *html/ggsce.html
0a699f451bf445abf9242c8e3a40673b *html/multiplot.html
6b80af3ecc9c24113530e31fabbfb1a2 *html/nexprs.html
43d3284a143c203afc66e79f7e00936b *html/plotColData.html
77ba054dfa1d1ad9b5e78a410b1e8658 *html/plotDots.html
56fd1f1cacba8f623974c26ccdeba157 *html/plotExplanatoryPCs.html
3e95dfa73e22a1beb01e69d989fe4d4d *html/plotExplanatoryVariables.html
b2ae74de7bd709d4b63cf5e2eea4f333 *html/plotExpression.html
823ef9116d8ef9c009681dd0a155c5a0 *html/plotGroupedHeatmap.html
63f100494a95efe2abe15d261b57d519 *html/plotHeatmap.html
1a12dd1edad04a269f27ea8acbfc0e0b *html/plotHighestExprs.html
7ff2f9840e830f04743ccb140cf52578 *html/plotPlatePosition.html
150552a63998558539b5f97511998ea7 *html/plotRLE.html
3e91498da71be76fb2e391d38e56330e *html/plotReducedDim.html
80e3d2a3fa2bd1f024f9bae1e58928ce *html/plotRowData.html
069ac00e960b347292b9ac5bece3a8a4 *html/plotScater.html
bdd6cc97b0b94f46be53cc4e08c0d451 *html/plot_reddim.html
a25cb850cbb81376273f7a61323f9822 *html/reexports.html
e2d3d6067cea28a0fd121969663120f8 *html/retrieveCellInfo.html
7bf9a0d85adc0e8cfc3d5f749efa35fa *html/retrieveFeatureInfo.html
6463cae8dc8b39ae487432e3670e0673 *html/runColDataPCA.html
c5e45ab72aeedc1bcbca9cb990cee2cb *html/runDiffusionMap.html
d25c820ee2456d69612082a0776853a5 *html/runMDS.html
30a5fea2fae29c29f7a3c7a4a14e9538 *html/runMultiUMAP.html
e4d3462af51765114d264977f6adb12b *html/runNMF.html
95acded9e4a251b35cd998507f822717 *html/runPCA.html
4c000527db4ae8218424b60cc1deae03 *html/runTSNE.html
e21ffbbdc963fc9d0f6bcd6eba14424d *html/runUMAP.html
b4d083098e3cd06eb14881ae4d418a0e *html/scater-pkg.html
c82ebec909d7c8de6f994bddecc68950 *html/scater-plot-args.html
b1b897a10195c076350db293a8c56e36 *html/toSingleCellExperiment.html
e2c260c556624ff60831740c04eb04d9 *www/scater_qc_workflow.png
